Wednesday, April 9, 2014

Nature Biotechnology Contents: Volume 32 pp 295 - 396

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TABLE OF CONTENTS

April 2014 Volume 32, Issue 4

Editorial
News
Bioentrepreneur
Opinion and Comment
Features
News and Views
Computational Biology
Research
Careers and Recruitment

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Editorial

Top

Genome editing for all   p295
doi:10.1038/nbt.2879
CRISPR-Cas is about to transform how we interrogate genetic variants and model disease.

News

Top

Immune-checkpoint inhibitors march on, now in combinations   pp297 - 299
Cormac Sheridan
doi:10.1038/nbt0414-297

Ablynx checkpoint agents lure Merck   p298
Gunjan Sinha
doi:10.1038/nbt0414-298

Mitochondrial medicine   p300
Emma Dorey
doi:10.1038/nbt0414-300a

Leptin therapy gains FDA approval   pp300 - 302
Gunjan Sinha
doi:10.1038/nbt0414-300b

Epilepsy neurodevice approved   p301
Alli Proffitt
doi:10.1038/nbt0414-301

AAV gene therapy continues to woo investors   p302
Barbara Cassasus
doi:10.1038/nbt0414-302a

Cheerios alert   p302
doi:10.1038/nbt0414-302b

Circadian rhythm drug approved   p303
Man Tsuey Tse
doi:10.1038/nbt0414-303b

Engineered tracheas, corneas and arteries enter clinical testing   pp303 - 304
Michael Eisenstein
doi:10.1038/nbt0414-303a

Fraunhofer to mine Sanofi microbial collection   p305
Jeffrey L Fox
doi:10.1038/nbt0414-305a

First royal to have genome sequenced   p305
doi:10.1038/nbt0414-305b

Cancer trial assesses clinical benefit of gene-targeted treatment   p306
Alla Katsnelson
doi:10.1038/nbt0414-306

Ten large companies join NIH to speed up drug discovery   p307
Jeffrey L Fox
doi:10.1038/nbt0414-307a

Around the world in a month   p307
doi:10.1038/nbt0414-307b

Data Page

Drought-tolerant varieties begin global march   p308
Andrew Marshall
doi:10.1038/nbt.2875

News Feature

Gene editing at CRISPR speed   pp309 - 312
doi:10.1038/nbt.2863
Ease of use, economy and speed of targeting DNA has propelled the CRISPR-Cas system into the spotlight. Now, despite numerous gaps in our knowledge, commercial entities are looking for a piece of the action. Monya Baker reports.

Bioentrepreneur

Top
Datapage

Academic-industry partnerships 2013   p313
Brady Huggett
doi:10.1038/nbt.2861

Podcast

First Rounders: Michael West   p313
doi:10.1038/nbt0414-313

Opinion and Comment

Top
Correspondence

HIV eradication—from Berlin to Boston   pp315 - 316
Paula M Cannon, Donald B Kohn and Hans-Peter Kiem
doi:10.1038/nbt.2868

The time is ripe for an ethics of entrepreneurship   pp316 - 318
Christopher Thomas Scott, Emily L Borgelt and Sandra Soo-Jin Lee
doi:10.1038/nbt.2867

The third way of umbilical cord blood banking   pp318 - 319
Hung-Chieh Chang
doi:10.1038/nbt.2866

The morality of patents on pre-implantation genetic diagnosis   pp319 - 320
David B Resnik
doi:10.1038/nbt.2865

Putting cells to sleep for future science   pp320 - 322
Glyn N Stacey and John G Day
doi:10.1038/nbt.2869

Features

Top

A survey of breakthrough therapy designations   pp323 - 330
Saurabh (Rob) Aggarwal
doi:10.1038/nbt.2864
As of last month, 41 products have been granted breakthrough therapy designations by the US Food and Drug Administration[mdash]drugs against cancer, hepatitis C and monogenetic diseases predominate.

Patents

Does CRISPR-Cas open new possibilities for patents or present a moral maze?   pp331 - 333
Philip Webber
doi:10.1038/nbt.2843
CRISPR-Cas systems, which enable the production of new artificial genes, synthetic proteins and new transgenic organisms, will challenge patent practices worldwide.

Recent patent applications in CRISPR-Cas systems   p334
doi:10.1038/nbt.2883

News and Views

Top

New models of human immunity   pp335 - 336
Hergen Spits
doi:10.1038/nbt.2871
Two humanized mouse models open up a plethora of research applications.

See also: Research by Lee et al. | Research by Rongvaux et al.

Making light of stress   pp337 - 338
Jefferson Chan and Christopher J Chang
doi:10.1038/nbt.2873
A nanoparticle that senses reactive oxygen and nitrogen species in the liver should improve in vivo detection of cellular stress.

See also: Research by Shuhendler et al.

Cas9 in close-up   pp338 - 340
Erin L Garside and Andrew M MacMillan
doi:10.1038/nbt.2872
Structural and biochemical studies elucidate DNA targeting by the Cas9 endonuclease.

Research Highlights   p340
doi:10.1038/nbt.2876

Biotechnology
JOBS of the week
Postdoctoral Research Assistant
University of Dundee
PhD in Influenza Immunity
University of Kent
Postdoctoral Research - Aging Bioinformatics
Buck Institute for Research on Aging
Chair (W3) of Proteomics
TU Dresden - Biotechnology Centre (BIOTEC)
Research Group Leader in Membrane Biochemistry
Max Planck Institute of Molecular Cell Biology and Genetics
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September 14, 2014
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Computational Biology

Top
Analysis

Genome-guided transcript assembly by integrative analysis of RNA sequence data   pp341 - 346
Nathan Boley, Marcus H Stoiber, Benjamin W Booth, Kenneth H Wan, Roger A Hoskins et al.
doi:10.1038/nbt.2850
Boley et al. describe an automated approach for integrating multiple types of RNA sequence data to assemble transcripts.

Research

Top
Review

CRISPR-Cas systems for editing, regulating and targeting genomes   pp347 - 355
Jeffry D Sander and J Keith Joung
doi:10.1038/nbt.2842

Articles

Complete humanization of the mouse immunoglobulin loci enables efficient therapeutic antibody discovery   pp356 - 363
E-Chiang Lee, Qi Liang, Hanif Ali, Luke Bayliss, Alastair Beasley et al.
doi:10.1038/nbt.2825
Mice engineered to express the entire human variable immunoglobulin region enable rapid isolation of high-affinity antibodies specific for antigens of interest.

See also: News and Views by Spits

Development and function of human innate immune cells in a humanized mouse model   pp364 - 372
Anthony Rongvaux, Tim Willinger, Jan Martinek, Till Strowig, Sofia V Gearty et al.
doi:10.1038/nbt.2858
A mouse bearing multiple human cytokine genes enables in vivo development and function of various human innate immune cell types.

See also: News and Views by Spits

Real-time imaging of oxidative and nitrosative stress in the liver of live animals for drug-toxicity testing   pp373 - 380
Adam J Shuhendler, Kanyi Pu, Lina Cui, Jack P Uetrecht and Jianghong Rao
doi:10.1038/nbt.2838
Semiconducting polymer nanoparticles are used to image toxic reactive oxygen and reactive nitrogen species in live mice.

See also: News and Views by Chan & Chang

Letters

The dynamics and regulators of cell fate decisions are revealed by pseudotemporal ordering of single cells   pp381 - 386
Cole Trapnell, Davide Cacchiarelli, Jonna Grimsby, Prapti Pokharel, Shuqiang Li et al.
doi:10.1038/nbt.2859
An algorithm uncovers transcriptome dynamics during differentiation by ordering RNA-Seq data from single cells.

Massively parallel functional annotation of 3[prime] untranslated regions   pp387 - 391
Wenxue Zhao, Joshua L Pollack, Denitza P Blagev, Noah Zaitlen, Michael T McManus et al.
doi:10.1038/nbt.2851
A method for high-throughput functional testing of 3[prime] UTR sequences uncovers new regulatory elements and effects of noncoding genetic variants.

Careers and Recruitment

Top

Pay increases still healthy for nonfounder executives at private life sciences companies   pp393 - 395
Bruce Rychlik
doi:10.1038/nbt.2878
Executive cash compensation data for nonfounders revealed a 3% year-over-year rise.

People

People   p396
doi:10.1038/nbt.2882

Top
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