The ISME Journal - Table of Contents alert Volume 8 Issue 1

TABLE OF CONTENTS Volume 8, Issue 1 (January 2014) In this issue Commentaries Original Articles Short Communication Also new AOP Sign up for e-alerts Recommend to your library Web feed Subscribe Advertisement Stay connected to The ISME Journal Follow us on Twitter and Facebook for all the latest news from the journal and updates on The 15th International Society for Microbial Ecology Conference taking place in Seoul from Aug 24-29 2014. Don't miss out! Commentaries Top MIxS-BE: a MIxS extension defining a minimum information standard for sequence data from the built environment OPEN Elizabeth M Glass, Yekaterina Dribinsky, Pelin Yilmaz, Hal Levin, Robert Van Pelt, Doug Wendel, Andreas Wilke, Jonathan A Eisen, Sue Huse, Anna Shipanova, Mitch Sogin, Jason Stajich, Rob Knight, Folker Meyer and Lynn M Schriml ISME J 2014 8: 1-3; advance online publication, October 24, 2013; 10.1038/ismej.2013.176 Full Text Syntrophy in microbial fuel cells Jan Dolfing ISME J 2014 8: 4-5; advance online publication, October 31, 2013; 10.1038/ismej.2013.198 Full Text Original Articles Top MICROBIAL POPULATION AND COMMUNITY ECOLOGY Compartmentalized microbial composition, oxygen gradients and nitrogen fixation in the gut of Odontotaenius disjunctus Javier A Ceja-Navarro, Nhu H Nguyen, Ulas Karaoz, Stephanie R Gross, Donald J Herman, Gary L Andersen, Thomas D Bruns, Jennifer Pett-Ridge, Meredith Blackwell and Eoin L Brodie ISME J 2014 8: 6-18; advance online publication, August 29, 2013; 10.1038/ismej.2013.134 Abstract | Full Text Community history affects the predictability of microbial ecosystem development Eulyn Pagaling, Fiona Strathdee, Bryan M Spears, Michael E Cates, Rosalind J Allen and Andrew Free ISME J 2014 8: 19-30; advance online publication, August 29, 2013; 10.1038/ismej.2013.150 Abstract | Full Text MICROBE-MICROBE AND MICROBE-HOST INTERACTIONS Bacterial profiling of White Plague Disease in a comparative coral species framework OPEN Cornelia Roder, Chatchanit Arif, Till Bayer, Manuel Aranda, Camille Daniels, Ahmed Shibl, Suchana Chavanich and Christian R Voolstra ISME J 2014 8: 31-39; advance online publication, August 8, 2013; 10.1038/ismej.2013.127 Abstract | Full Text Allying with armored snails: the complete genome of gammaproteobacterial endosymbiont Satoshi Nakagawa, Shigeru Shimamura, Yoshihiro Takaki, Yohey Suzuki, Shun-ichi Murakami, Tamaki Watanabe, So Fujiyoshi, Sayaka Mino, Tomoo Sawabe, Takahiro Maeda, Hiroko Makita, Suguru Nemoto, Shin-Ichiro Nishimura, Hiromi Watanabe, Tomo-o Watsuji and Ken Takai ISME J 2014 8: 40-51; advance online publication, August 8, 2013; 10.1038/ismej.2013.131 Abstract | Full Text Physiologic and metagenomic attributes of the rhodoliths forming the largest CaCO3 bed in the South Atlantic Ocean Giselle S Cavalcanti, Gustavo B Gregoracci, Eidy O dos Santos, Cynthia B Silveira, Pedro M Meirelles, Leila Longo, Kazuyoshi Gotoh, Shota Nakamura, Tetsuya Iida, Tomoo Sawabe, Carlos E Rezende, Ronaldo B Francini-Filho, Rodrigo L Moura, Gilberto M Amado-Filho and Fabiano L Thompson ISME J 2014 8: 52-62; advance online publication, August 29, 2013; 10.1038/ismej.2013.133 Abstract | Full Text Host-specific adaptation governs the interaction of the marine diatom, Pseudo-nitzschia and their microbiota Marilou P Sison-Mangus, Sunny Jiang, Kevin N Tran and Raphael M Kudela ISME J 2014 8: 63-76; advance online publication, August 29, 2013; 10.1038/ismej.2013.138 Abstract | Full Text EVOLUTIONARY GENETICS Repeated triggering of sporulation in Bacillus subtilis selects against a protein that affects the timing of cell division Jeroen Siebring, Matthijs JH Elema, Fátima Drubi Vega, Ákos T Kovács, Patsy Haccou and Oscar P Kuipers ISME J 2014 8: 77-87; advance online publication, August 8, 2013; 10.1038/ismej.2013.128 Abstract | Full Text INTEGRATED GENOMICS AND POST-GENOMICS APPROACHES IN MICROBIAL ECOLOGY Metaproteomics of cellulose methanisation under thermophilic conditions reveals a surprisingly high proteolytic activity Fan Lü, Ariane Bize, Alain Guillot, Véronique Monnet, Céline Madigou, Olivier Chapleur, Laurent Mazéas, Pinjing He and Théodore Bouchez ISME J 2014 8: 88-102; advance online publication, August 15, 2013; 10.1038/ismej.2013.120 Abstract | Full Text Shotgun metagenomics indicates novel family A DNA polymerases predominate within marine virioplankton Helen F Schmidt, Eric G Sakowski, Shannon J Williamson, Shawn W Polson and KEric Wommack ISME J 2014 8: 103-114; advance online publication, August 29, 2013; 10.1038/ismej.2013.124 Abstract | Full Text Integrating metagenomic and amplicon databases to resolve the phylogenetic and ecological diversity of the Chlamydiae Ilias Lagkouvardos, Thomas Weinmaier, Federico M Lauro, Ricardo Cavicchioli, Thomas Rattei and Matthias Horn ISME J 2014 8: 115-125; advance online publication, August 15, 2013; 10.1038/ismej.2013.142 Abstract | Full Text GEOMICROBIOLOGY AND MICROBIAL CONTRIBUTIONS TO GEOCHEMICAL CYCLES Taxonomically and functionally diverse microbial communities in deep crystalline rocks of the Fennoscandian shield Mari Nyyssönen, Jenni Hultman, Lasse Ahonen, Ilmo Kukkonen, Lars Paulin, Pia Laine, Merja Itävaara and Petri Auvinen ISME J 2014 8: 126-138; advance online publication, August 15, 2013; 10.1038/ismej.2013.125 Abstract | Full Text Bacterial genome replication at subzero temperatures in permafrost Steven J Tuorto, Phillip Darias, Lora R McGuinness, Nicolai Panikov, Tingjun Zhang, Max M Häggblom and Lee J Kerkhof ISME J 2014 8: 139-149; advance online publication, August 29, 2013; 10.1038/ismej.2013.140 Abstract | Full Text MICROBIAL ECOLOGY AND FUNCTIONAL DIVERSITY OF NATURAL HABITATS Nitrate-based niche differentiation by distinct sulfate-reducing bacteria involved in the anaerobic oxidation of methane A Green-Saxena, A E Dekas, N F Dalleska and V J Orphan ISME J 2014 8: 150-163; advance online publication, September 5, 2013; 10.1038/ismej.2013.147 Abstract | Full Text Mixotrophic haptophytes are key bacterial grazers in oligotrophic coastal waters Fernando Unrein, Josep M Gasol, Fabrice Not, Irene Forn and Ramon Massana ISME J 2014 8: 164-176; advance online publication, August 8, 2013; 10.1038/ismej.2013.132 Abstract | Full Text Lineage-specific molecular probing reveals novel diversity and ecological partitioning of haplosporidians Hanna Hartikainen, Oliver S Ashford, Cédric Berney, Beth Okamura, Stephen W Feist, Craig Baker-Austin, Grant D Stentiford and David Bass ISME J 2014 8: 177-186; advance online publication, August 22, 2013; 10.1038/ismej.2013.136 Abstract | Full Text Metagenomic analysis of size-fractionated picoplankton in a marine oxygen minimum zone Sangita Ganesh, Darren J Parris, Edward F DeLong and Frank J Stewart ISME J 2014 8: 187-211; advance online publication, September 12, 2013; 10.1038/ismej.2013.144 Abstract | Full Text MICROBIAL ECOSYSTEM IMPACTS Responses of the coastal bacterial community to viral infection of the algae Phaeocystis globosa Abdul R Sheik, Corina P D Brussaard, Gaute Lavik, Phyllis Lam, Niculina Musat, Andreas Krupke, Sten Littmann, Marc Strous and Marcel M M Kuypers ISME J 2014 8: 212-225; advance online publication, August 15, 2013; 10.1038/ismej.2013.135 Abstract | Full Text Resistance and resilience of the forest soil microbiome to logging-associated compaction Martin Hartmann, Pascal A Niklaus, Stephan Zimmermann, Stefan Schmutz, Johann Kremer, Kessy Abarenkov, Peter Lüscher, Franco Widmer and Beat Frey ISME J 2014 8: 226-244; advance online publication, September 12, 2013; 10.1038/ismej.2013.141 Abstract | Full Text Short Communication Top MICROBIAL POPULATION AND COMMUNITY ECOLOGY Seasonal microbial community dynamics correlate with phytoplankton-derived polysaccharides in surface coastal waters Joe D Taylor, Samuel D Cottingham, Jack Billinge and Michael Cunliffe ISME J 2014 8: 245-248; advance online publication, October 17, 2013; 10.1038/ismej.2013.178 Abstract | Full Text Natureevents is a fully searchable, multi-disciplinary database designed to maximise exposure for events organisers. 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