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| | | | | An outburst from a massive star 40 days before a supernova explosion | Various lines of evidence suggest that massive stars experience extreme mass-loss shortly before they explode as supernovae. This paper reports one such event: 40 days before the explosion of the type IIn supernova SN 2010mc its progenitor underwent an energetic outburst that released 0.01 solar masses of material at velocities of around 2,000 km per second. The close timing of this mass-loss outburst to the supernova explosion suggests that there is a causal connection between these events— a link that would provide a new way of studying pre-supernova massive-star evolution. | | | | | | | | | Magnetic-field-controlled reconfigurable semiconductor logic | This synthetic biology study both proposes and demonstrates a system for the DNA-based storage of digital information. Data are being produced at an ever-faster rate, requiring an increasing commitment to the maintenance of digital media in the archives. A record amount of information (including images, text and audio files) was encoded in DNA strands. The resulting DNA archive was shipped from California to Germany, the DNA was sequenced and the information recovered. At the current rate of DNA synthesis cost reduction, DNA-based information storage is expected to become cost effective within a decade for archives likely to be accessed rarely — say every 50 years. | | | | | | | | | Towards practical, high-capacity, low-maintenance information storage in synthesized DNA | Biodiversity can stabilize ecological systems as different species thrive in different conditions and buffer the impacts of change. Human land management homogenizes ecological systems, which may stabilize yields at the expense of biodiversity. To establish how such change influences ecosystem resilience, Andrew MacDougall and colleagues monitored productive but species-poor grassland that had been under fire prevention measures since the mid-1800s. Despite resilience to climate fluctuations and invasion, the ecosystem collapsed when fire was experimentally re-introduced. Grasslands survived only where there was a high diversity of native plants. These results imply a hidden vulnerability to sudden environmental change in many of the world's ecosystems. | | | | | | | | | | | | | | | Nature Biotechnology Focus on DNA Sequencing Technology Performance gains and falling costs have fueled diverse applications of high-throughput DNA sequencing. This focus issue summarizes the current status of these technologies as applied to life sciences and medical research. Click here to access the Focus! Produced with support from Ion Torrent. | | | | | | | | | | | | | | | In this week's podcast: the Earth's missing crust, the hidden genetic factors that explain trait heritability, and what we don't know about ice. | | | | | | |
| | | | | | | | | | | | | | | | | Unknown territory ▶ | | | Japan is making an overdue effort to regulate experimental stem-cell treatments. A clearly defined legal framework is needed to protect patients. | | | | | | | | In a hole ▶ | | | It is in Britain's best interests to keep looking for a site for a deep nuclear-waste repository. | | | | | | | | Body of evidence ▶ | | | The identification of a long-dead king is not simply an academic event. | | | | | | | | | | | | | | | | | Seven days: 1–7 February 2013 ▶ | | | The week in science: Richard III skeleton discovery confirmed; South Korea launches first satellite from home soil; and a keenly watched TB booster vaccine fails a major clinical trial. | | | | | | | | | | | | | | | | | | | | LHC set to halt for upgrades ▶ | | | Maintenance, improvement work and data analysis will keep scientists busy as collider's planned closure begins. | | | | | | | | | | | | | | | | | Translational research: Medicine man ▶ | | | As director of the NIH's bold new translational research centre, Christopher Austin has to show that he can jump-start a tortuous drug-discovery process. | | | | | | | | | | | | | | | | | | | | | | | | | | Q&A: Chronicler of conflict ▶ | | | Historian Richard Rhodes writes on the roots of violence and warfare, in particular the development of nuclear weapons. He talks about Reykjavik — his play on nuclear disarmament — and his upcoming book on the Spanish Civil War, That Fine Place. | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| | | | | | | The Vilcek Foundation congratulates Richard A. Flavell and Ruslan Medzhitov, winners of the Vilcek Prize in Biomedical Science. The winners of the Vilcek Prizes for Creative Promise in Biomedical Science are Hashim Al-Hashimi, Michael Rape, and Joanna Wysocka. The Vilcek Prizes honor immigrant contributions to the arts and sciences. Learn more at Vilcek.org. | | | | | | | | |
| | | | | | | | | | | | | | | | | | | FOXO3A directs a protective autophagy program in haematopoietic stem cells ▶ | | | Matthew R. Warr, Mikhail Binnewies, Johanna Flach, Damien Reynaud, Trit Garg et al. | | | Autophagy is shown to be an essential mechanism that protects haematopoietic stem cells from metabolic stress; the transcription factor FOXO3A maintains a pro-autophagy gene expression program that poises haematopoietic stem cells to rapidly mount a protective autophagic response upon metabolic stress. | | | | | | | | NFIB is a governor of epithelial–melanocyte stem cell behaviour in a shared niche ▶ | | | Chiung-Ying Chang, H. Amalia Pasolli, Eugenia G. Giannopoulou, Géraldine Guasch, Richard M. Gronostajski et al. | | | NFIB, a transcription factor expressed by epithelial hair follicle stem cells, is shown to coordinate the synchronous maturation of hair follicle stem cells and melanocyte stem cells, thus controlling hair regeneration and pigmentation. | | | | | | | | A two-step mechanism for TRF2-mediated chromosome-end protection ▶ | | | Keiji Okamoto, Cristina Bartocci, Iliana Ouzounov, Jolene K. Diedrich, John R. Yates III et al. | | | The telomere-biding protein TRF2 is shown to protect telomeres from activating the DNA-damage response through two mechanisms: preventing the activation ATM kinase through its dimerization domain, in addition to independently suppressing signalling events occurring downstream of ATM. | | | | | | | | APOBEC3B is an enzymatic source of mutation in breast cancer ▶ | | | Michael B. Burns, Lela Lackey, Michael A. Carpenter, Anurag Rathore, Allison M. Land et al. | | | The DNA cytosine deaminase APOBEC3B is shown to be overexpressed and highly active in most breast cancers; deamination by APOBEC3B could serve as an endogenous, continual source of DNA damage leading to mutations, including C-to-T transitions and other aberrations seen in many breast tumours. | | | | | | | | Sensitivity of tropical carbon to climate change constrained by carbon dioxide variability ▶ | | | Peter M. Cox, David Pearson, Ben B. Booth, Pierre Friedlingstein, Chris Huntingford et al. | | | A linear relationship between the sensitivity of tropical land carbon storage to warming and the sensitivity of the annual growth rate of atmospheric CO2 to tropical temperature anomalies provides a tight constraint on the sensitivity of tropical land carbon to climate change. | | | | | | | | Crystal structure of an RNA-bound 11-subunit eukaryotic exosome complex ▶ | | | Debora Lika Makino, Marc Baumgärtner & Elena Conti | | | The crystal structure of a complete yeast exosome (Exo-10) bound to a region of the Rrp6 nuclease and an RNA substrate is determined, demonstrating that the exosome binds and degrades RNA molecules with a channelling mechanism that is largely conserved in all kingdoms of life and is similar to the mechanism used by the proteasome to degrade polypeptides. | | | | | | | | T-helper-1-cell cytokines drive cancer into senescence ▶ | | | Heidi Braumüller, Thomas Wieder, Ellen Brenner, Sonja Aßmann, Matthias Hahn et al. | | | T-helper-1-cell cytokines tumour necrosis factor and interferon-γ are shown to drive tumour cells into senescence in a mouse model of β-cell carcinoma and human carcinoma cells. | | | | | | | | Finding the sources of missing heritability in a yeast cross ▶ | | | Joshua S. Bloom, Ian M. Ehrenreich, Wesley T. Loo, Thúy-Lan Võ Lite & Leonid Kruglyak | | | In a cross between two yeast strains, detected loci are found to explain nearly the entire additive contribution to heritable variation for a number of quantitative traits. | | | | | | | | | | | The ‘obligate diploid’ Candida albicans forms mating-competent haploids ▶ | | | Meleah A. Hickman, Guisheng Zeng, Anja Forche, Matthew P. Hirakawa, Darren Abbey et al. | | | Candida albicans is a prominent human fungal pathogen that until now was thought to be an obligate diploid; here it is shown that C. albicans can form viable haploids, that these haploids are able to mate to form heterozygous diploids, and that haploids and their auto-diploids are significantly less fit in vitro and in vivo than heterozygous progenitors or diploids formed by haploid mating pairs. | | | | | | | | | | | Towards practical, high-capacity, low-maintenance information storage in synthesized DNA ▶ | | | Nick Goldman, Paul Bertone, Siyuan Chen, Christophe Dessimoz, Emily M. LeProust et al. | | | An efficient and scalable strategy with robust error correction is reported for encoding a record amount of information (including images, text and audio files) in DNA strands; a ‘DNA archive’ has been synthesized, shipped from the USA to Germany, sequenced and the information read. | | | | | | | | | | | | | | tmc-1 encodes a sodium-sensitive channel required for salt chemosensation in C. elegans ▶ | | | Marios Chatzigeorgiou, Sangsu Bang, Sun Wook Hwang & William R. Schafer | | | The membrane protein TMC-1 is required for salt avoidance behaviour in C. elegans, functions as an ion channel directly activated by NaCl in vitro and is a candidate salt chemosensor; the human homologue of TMC-1 is linked to deafness and may be the cochlear hair-cell mechanotransduction channel. | | | | | | | | | | | | | | | | | | | | ATP-directed capture of bioactive herbal-based medicine on human tRNA synthetase ▶ | | | Huihao Zhou, Litao Sun, Xiang-Lei Yang & Paul Schimmel | | | The crystal structure of prolyl tRNA synthetase simultaneously bound to its substrate ATP and its inhibitor halofuginone, a derivative of a compound used to treat malaria, indicates that (through interactions with ATP) halofuginone occupies both the amino acid and tRNA binding sites on the synthetase, revealing a new model for developing synthetase inhibitors. | | | | | | | | Mitotic cell rounding accelerates epithelial invagination ▶ | | | Takefumi Kondo & Shigeo Hayashi | | | Drosophila epithelial tracheal placode invagination is shown to be driven by mitotic cell rounding along with epithelial growth factor receptor signalling and myosin contractility in neighbouring cells, revealing a new cell-division-independent role for mitotic events in morphogenesis. | | | | | | | | | | | | | | | | | | | | | | | Brief Communications Arising | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| | | | | | | Nature Reprint Collection on Epigenetics This collection of articles focuses on histone methylation, its links to human disease and the development of chemical modulators of histone methylation states as leads for chromatin-targeted drug discovery. Produced exclusively with support from Epizyme. | | | | | | | | |
| | | | | | | | | | | | | | | | Sensitivity of tropical carbon to climate change constrained by carbon dioxide variability ▶ | | | Peter M. Cox, David Pearson, Ben B. Booth, Pierre Friedlingstein, Chris Huntingford et al. | | | A linear relationship between the sensitivity of tropical land carbon storage to warming and the sensitivity of the annual growth rate of atmospheric CO2 to tropical temperature anomalies provides a tight constraint on the sensitivity of tropical land carbon to climate change. | | | | | | | | Crystal structure of an RNA-bound 11-subunit eukaryotic exosome complex ▶ | | | Debora Lika Makino, Marc Baumgärtner & Elena Conti | | | The crystal structure of a complete yeast exosome (Exo-10) bound to a region of the Rrp6 nuclease and an RNA substrate is determined, demonstrating that the exosome binds and degrades RNA molecules with a channelling mechanism that is largely conserved in all kingdoms of life and is similar to the mechanism used by the proteasome to degrade polypeptides. | | | | | | | | | | | | | | Towards practical, high-capacity, low-maintenance information storage in synthesized DNA ▶ | | | Nick Goldman, Paul Bertone, Siyuan Chen, Christophe Dessimoz, Emily M. LeProust et al. | | | An efficient and scalable strategy with robust error correction is reported for encoding a record amount of information (including images, text and audio files) in DNA strands; a ‘DNA archive’ has been synthesized, shipped from the USA to Germany, sequenced and the information read. | | | | | | | | ATP-directed capture of bioactive herbal-based medicine on human tRNA synthetase ▶ | | | Huihao Zhou, Litao Sun, Xiang-Lei Yang & Paul Schimmel | | | The crystal structure of prolyl tRNA synthetase simultaneously bound to its substrate ATP and its inhibitor halofuginone, a derivative of a compound used to treat malaria, indicates that (through interactions with ATP) halofuginone occupies both the amino acid and tRNA binding sites on the synthetase, revealing a new model for developing synthetase inhibitors. | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Crystal structure of an RNA-bound 11-subunit eukaryotic exosome complex ▶ | | | Debora Lika Makino, Marc Baumgärtner & Elena Conti | | | The crystal structure of a complete yeast exosome (Exo-10) bound to a region of the Rrp6 nuclease and an RNA substrate is determined, demonstrating that the exosome binds and degrades RNA molecules with a channelling mechanism that is largely conserved in all kingdoms of life and is similar to the mechanism used by the proteasome to degrade polypeptides. | | | | | | | | | | | | | | An outburst from a massive star 40 days before a supernova explosion ▶ | | | E. O. Ofek, M. Sullivan, S. B. Cenko, M. M. Kasliwal, A. Gal-Yam et al. | | | A mass-loss event 40 days before the explosion of the type IIn supernova SN 2010mc has been detected; the outburst indicates that there is a causal relation between explosive mass-loss events seen in some massive stars before their explosion and the onset of the supernova explosion. | | | | | | | | | | | Magnetic-field-controlled reconfigurable semiconductor logic ▶ | | | Sungjung Joo, Taeyueb Kim, Sang Hoon Shin, Ju Young Lim, Jinki Hong et al. | | | A microchannel made from InSb, which has current–voltage characteristics that are strongly dependent on the sign and magnitude of an applied magnetic field, is used to demonstrate that circuits made from such structures can be programmed — and reprogrammed — to perform elementary logic functions, such as AND, OR, NAND and NOR. | | | | | | | | Towards practical, high-capacity, low-maintenance information storage in synthesized DNA ▶ | | | Nick Goldman, Paul Bertone, Siyuan Chen, Christophe Dessimoz, Emily M. LeProust et al. | | | An efficient and scalable strategy with robust error correction is reported for encoding a record amount of information (including images, text and audio files) in DNA strands; a ‘DNA archive’ has been synthesized, shipped from the USA to Germany, sequenced and the information read. | | | | | | | | ATP-directed capture of bioactive herbal-based medicine on human tRNA synthetase ▶ | | | Huihao Zhou, Litao Sun, Xiang-Lei Yang & Paul Schimmel | | | The crystal structure of prolyl tRNA synthetase simultaneously bound to its substrate ATP and its inhibitor halofuginone, a derivative of a compound used to treat malaria, indicates that (through interactions with ATP) halofuginone occupies both the amino acid and tRNA binding sites on the synthetase, revealing a new model for developing synthetase inhibitors. | | | | | | | | | | | Spin–orbit coupling in quantum gases ▶ | | | Victor Galitski & Ian B. Spielman | | | The current experimental and theoretical status of spin–orbit coupling in ultracold atomic systems is discussed, highlighting unique features that enable otherwise impossible physics. | | | | | | | | | | | | | | | | | Brief Communications Arising | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Sensitivity of tropical carbon to climate change constrained by carbon dioxide variability ▶ | | | Peter M. Cox, David Pearson, Ben B. Booth, Pierre Friedlingstein, Chris Huntingford et al. | | | A linear relationship between the sensitivity of tropical land carbon storage to warming and the sensitivity of the annual growth rate of atmospheric CO2 to tropical temperature anomalies provides a tight constraint on the sensitivity of tropical land carbon to climate change. | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Specials - Technology Feature | ▲top | | | | | | | |
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| | | | | | | | | Communication: Two minutes to impress ▶ | | | With ruthless revision, researchers can compose a punchy 'elevator speech' to sell their science to a neighbour, potential employer or politician. | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Minority enrolment falls ▶ | | | US bans on affirmative action linked to reduction in number of minority graduate students in science. | | | | | | | | | | | Careers related news & comment | | | | | | | | | | | | |
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