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| | | | | | Special: 2012 Review of the Year | | | | | | From the discovery of the Higgs boson to the landing of the Curiosity rover on Mars, 2012 was an eventful year in science. Nature's end of year round-up reviews the highs and lows in research and science policy. ▼ more | | | | | | | | | | Specials - Outlook: Psoriasis | | | | | | After decades of modest advances, psoriasis research has caught fire. The drug pipeline is full of novel agents. Research into the role of the immune system in this skin disease is bearing fruit. Genetic studies hint at the condition's starting point. And now psoriasis is a proof-of-principle disease for other chronic inflammatory conditions. ▼ more | | | | | | | | | | | | | | Evaporative cooling of the dipolar hydroxyl radical | | Evaporative cooling is what makes a steaming cup of coffee grow cold, and forced evaporative cooling of trapped atoms is the process used to produce ultracold Bose–Einstein condensates where the quantum regime rules. Ultracold quantum gases of molecules — as opposed to atoms — may have even richer physics. This paper shows that it is possible to produce such matter, reporting microwave-forced evaporative cooling of hydroxyl (OH) molecules in a magnetic quadrupole trap. | | | | | | | | | | | | | | | | | | | | | | | | Flickering gives early warning signals of a critical transition to a eutrophic lake state | | Critical transitions in experimental and theoretical systems can be anticipated on the basis of specific warning signs. It should also be also possible to predict real-world events — the global financial crisis and Arab spring for instance — but what to measure? One possibility is flickering, in which increasing shifts between alternative stable states are seen in the run up to the transition. This study uses data from a Chinese lake to show that flickering can be observed up to 20 years before a critical transition — the deterioration of the lake towards a dead state as algae consume all the oxygen. | | | | | | | | | | | | | | Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres | | This study of plants of the cotton genus reveals the genetics behind the emergence of spinnable fibres in domesticated cottons. There was an abrupt sixfold ploidy increase 60 million years ago, and allopolyploidy reunited divergent genomes a million years ago. This caused a 30-fold duplication of ancestral flowering plant genes in the 'elite' cottons, Gossypium hirsutum and G. barbadense, compared to their progenitor G. raimondii. | | | | | | | | | | | | | | | | In this week's podcast: This week, wine with a hint of drought, the secrets of scaling in embryos, and the biggest science stories of 2012. | | | | | | | |
| | | | | | | | | | | | | | | | | | | | | | 366 days: 2012 in review ▶ | | | | This epic year for science saw the discovery of the Higgs boson and Curiosity's arrival on Mars, but researchers also felt the sting of austerity. | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | The limits of free speech ▶ | | | | Unregulated drug marketing stifles science and harms patients. To suggest otherwise is an affront to liberty — not a protection of it. | | | | | | | | | | | | A burden weighed ▶ | | | | Despite some shortcomings, a global study of health metrics should be applauded. | | | | | | | | | | | | Head of the line ▶ | | | | Japanese scientists deserve support in their bid for the next big collider. | | | | | | | | | | | | | | | | | | | | | | | | Seven days: 14–20 December 2012 ▶ | | | | The news in brief: Broken boiler delays Antarctic drilling; Texas cancer institute faces criminal probe; and massive shark sanctuary is founded in the Pacific. | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Vintage scientists ▶ | | | | Nature uncorks five tales of researchers who plunged into the heady science of viticulture. | | | | | | | | | | | | | | | | Nutrition: Sugar caned ▶ | | | | David Katz finds much to chew on in a polemic on the risk of consuming too much high-fructose corn syrup. | | | | | | | | | | | | | | | | | | | |
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| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Craniofacial development of hagfishes and the evolution of vertebrates ▶ | | | | Yasuhiro Oisi, Kinya G. Ota, Shigehiro Kuraku, Satoko Fujimoto & Shigeru Kuratani | | | | Comparative analysis of the genomes of one mollusc (Lottia gigantea) and two annelids (Capitella teleta and Helobdella robusta) enable a more complete reconstruction of genomic features of the last common ancestors of protostomes, bilaterians and metazoans; against this conserved background they provide the first glimpse into lineage-specific evolution and diversity of the lophotrochozoans. | | | | | | | | | | | | Insights into bilaterian evolution from three spiralian genomes OPEN ▶ | | | | Oleg Simakov, Ferdinand Marletaz, Sung-Jin Cho, Eric Edsinger-Gonzales, Paul Havlak et al. | | | | An analysis of staged hagfish embryos shows that the hagfish adenohypophysis is ectodermal in origin, revealing it to be a developmental quirk unique to hagfishes that was hitherto misleading; from this and other observations a ‘pan-cyclostome’ developmental pattern is derived, indicating that it was primitive for all vertebrates. | | | | | | | | | | | | Nuclear genome transfer in human oocytes eliminates mitochondrial DNA variants ▶ | | | | Daniel Paull, Valentina Emmanuele, Keren A. Weiss, Nathan Treff, Latoya Stewart et al. | | | | Nuclear genome transfer using unfertilized donor oocytes is performed and shown to be effective in preventing the transmission of mitochondrial DNA mutations; the swapped oocytes can develop to the blastocyst stage, and produce parthenogenetic embryonic stem-cell lines that show normal karyotypes and only mitochondrial DNA from the donor oocyte. | | | | | | | | | | | | Structure of a presenilin family intramembrane aspartate protease ▶ | | | | Xiaochun Li, Shangyu Dang, Chuangye Yan, Xinqi Gong, Jiawei Wang et al. | | | | Presenilin, the catalytic component of γ-secretase, cleaves amyloid precursor protein into short peptides that form the plaques that are found in the brains of patients with Alzheimer’s disease; here the structure of a presenilin homologue is described, which will serve as a framework for understanding the mechanisms of action of presenilin and γ-secretase. | | | | | | | | | | | | | | | | Scaling of embryonic patterning based on phase-gradient encoding ▶ | | | | Volker M. Lauschke, Charisios D. Tsiairis, Paul François & Alexander Aulehla | | | | An ex vivo primary culture assay is developed that recapitulates mouse embryonic mesodermal patterning and segment formation; using this approach, it is shown that oscillating gene activity is central to maintain stable proportions during development. | | | | | | | | | | | | | | | | Mosaic PPM1D mutations are associated with predisposition to breast and ovarian cancer ▶ | | | | Elise Ruark, Katie Snape, Peter Humburg, Chey Loveday, Ilirjana Bajrami et al. | | | | Rare truncating mutations in the p53-inducible protein phosphatase PPM1D are shown to be associated with predisposition to breast cancer and ovarian cancer; notably, all of the mutations are mosaic in white blood cells but are not present in tumours, and probably have a gain-of-function effect. | | | | | | | | | | | | | | | | | | | | | | | | Seventy-five genetic loci influencing the human red blood cell ▶ | | | | Pim van der Harst, Weihua Zhang, Irene Mateo Leach, Augusto Rendon, Niek Verweij et al. | | | | A series of genetic studies have led to the discovery of novel independent loci and candidate genes associated with red blood cell phenotype; for a proportion of these genes potential single-nucleotide genetic variants are also identified, providing new insights into genetic pathways controlling red blood cell formation, function and pathology. | | | | | | | | | | | | Functional screening identifies miRNAs inducing cardiac regeneration ▶ | | | | Ana Eulalio, Miguel Mano, Matteo Dal Ferro, Lorena Zentilin, Gianfranco Sinagra et al. | | | | The human heart regenerates poorly, causing insufficient healing after injury; here, microRNAs screened for the ability to induce cardiomyocyte proliferation are shown to stimulate cardiac regeneration and almost complete recovery of the heart after infarction. | | | | | | | | | | | | FMRP targets distinct mRNA sequence elements to regulate protein expression ▶ | | | | Manuel Ascano, Neelanjan Mukherjee, Pradeep Bandaru, Jason B. Miller, Jeffrey D. Nusbaum et al. | | | | RNA-recognition elements are identified for the fragile-X-syndrome-associated RNA-binding protein FMRP, in addition to its target messenger RNAs; although many of FMRP gene targets discovered are involved in brain function and autism spectrum disorder, a proportion are also dysregulated in mouse ovaries, suggesting cross-regulation of signalling pathways in different tissues. | | | | | | | | | | | | High-resolution crystal structure of human protease-activated receptor 1 ▶ | | | | Cheng Zhang, Yoga Srinivasan, Daniel H. Arlow, Juan Jose Fung, Daniel Palmer et al. | | | | The X-ray crystal structure of the human G-protein-coupled receptor protease-activated receptor 1 (PAR1) bound to the antagonist vorapaxar is solved, revealing an unusual method of drug binding that should facilitate the development of improved PAR1-selective antagonists. | | | | | | | | | | | | Flickering gives early warning signals of a critical transition to a eutrophic lake state ▶ | | | | Rong Wang, John A. Dearing, Peter G. Langdon, Enlou Zhang, Xiangdong Yang et al. | | | | Critical transitions in experimental and theoretical systems can be anticipated on the basis of specific warning signs, with ‘critical slowing down’ being the best studied; long-term data from a real system, a Chinese lake, now show that a flickering phenomenon can be observed up to 20 years before the critical transition to a eutrophic state. | | | | | | | | | | | | Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres OPEN ▶ | | | | Andrew H. Paterson, Jonathan F. Wendel, Heidrun Gundlach, Hui Guo, Jerry Jenkins et al. | | | | The Gossypium genus is used to investigate emergent consequences of polyploidy in cotton species; comparative genomic analyses reveal a complex evolutionary history including interactions among subgenomes that result in genetic novelty in elite cottons and provide insight into the evolution of spinnable fibres. | | | | | | | | | | | | A prefrontal cortex–brainstem neuronal projection that controls response to behavioural challenge ▶ | | | | Melissa R. Warden, Aslihan Selimbeyoglu, Julie J. Mirzabekov, Maisie Lo, Kimberly R. Thompson et al. | | | | High-speed tracking of effortful responses and neuronal activity in rats during a forced swim test identifies medial prefrontal cortex (mPFC) neurons that respond during escape-related swimming but not normal locomotion, and optogenetics shows that mPFC neurons projecting to the brainstem dorsal raphe nucleus, which is implicated in depression, modulate this behavioural response to challenge | | | | | | | | | | | | Layered reward signalling through octopamine and dopamine in Drosophila ▶ | | | | Christopher J. Burke, Wolf Huetteroth, David Owald, Emmanuel Perisse, Michael J. Krashes et al. | | | | Dopamine is synonymous with reward in mammals but associated with aversive reinforcement in insects, where reward seems to be signalled by octopamine; here it is shown that flies have discrete populations of dopamine neurons representing positive or negative values that are coordinately regulated by octopamine. | | | | | | | | | | | | | | | | Tet1 controls meiosis by regulating meiotic gene expression ▶ | | | | Shinpei Yamaguchi, Kwonho Hong, Rui Liu, Li Shen, Azusa Inoue et al. | | | | A loss-of-function approach in mice is used to show that the methylcytosine dioxygenase Tet1 has a role in regulating meiosis and meiotic gene activation in female germ cells; Tet1 deficiency does not greatly affect genome-wide demethylation but has a more specific effect on the expression of a subset of meiotic genes. | | | | | | | | | | | | Structure of the Mediator head module ▶ | | | | Laurent Larivière, Clemens Plaschka, Martin Seizl, Larissa Wenzeck, Fabian Kurth et al. | | | | The crystal structure of the Mediator head module from the fission yeast Schizosaccharomyces pombe is solved at 3.4 Å resolution. | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| | | | | | | | | | | | | | Royal Society medals and awards 2013 - Call for nominations open The Royal Society's medals, awards and prize lectureships provide an opportunity for you to celebrate excellence in science among your colleagues and the scientific community. We invite you to nominate scientists who have made outstanding achievements in all areas of Science, Technology, Engineering and Mathematics. The deadline for nominations is Friday 8 February 2013. For more information please visit royalsociety.org/awards/nominations. | | | | | | | | | | |
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Structure of a presenilin family intramembrane aspartate protease ▶ | | | | Xiaochun Li, Shangyu Dang, Chuangye Yan, Xinqi Gong, Jiawei Wang et al. | | | | Presenilin, the catalytic component of γ-secretase, cleaves amyloid precursor protein into short peptides that form the plaques that are found in the brains of patients with Alzheimer’s disease; here the structure of a presenilin homologue is described, which will serve as a framework for understanding the mechanisms of action of presenilin and γ-secretase. | | | | | | | | | | | | | | | | FMRP targets distinct mRNA sequence elements to regulate protein expression ▶ | | | | Manuel Ascano, Neelanjan Mukherjee, Pradeep Bandaru, Jason B. Miller, Jeffrey D. Nusbaum et al. | | | | RNA-recognition elements are identified for the fragile-X-syndrome-associated RNA-binding protein FMRP, in addition to its target messenger RNAs; although many of FMRP gene targets discovered are involved in brain function and autism spectrum disorder, a proportion are also dysregulated in mouse ovaries, suggesting cross-regulation of signalling pathways in different tissues. | | | | | | | | | | | | High-resolution crystal structure of human protease-activated receptor 1 ▶ | | | | Cheng Zhang, Yoga Srinivasan, Daniel H. Arlow, Juan Jose Fung, Daniel Palmer et al. | | | | The X-ray crystal structure of the human G-protein-coupled receptor protease-activated receptor 1 (PAR1) bound to the antagonist vorapaxar is solved, revealing an unusual method of drug binding that should facilitate the development of improved PAR1-selective antagonists. | | | | | | | | | | | | Flickering gives early warning signals of a critical transition to a eutrophic lake state ▶ | | | | Rong Wang, John A. Dearing, Peter G. Langdon, Enlou Zhang, Xiangdong Yang et al. | | | | Critical transitions in experimental and theoretical systems can be anticipated on the basis of specific warning signs, with ‘critical slowing down’ being the best studied; long-term data from a real system, a Chinese lake, now show that a flickering phenomenon can be observed up to 20 years before the critical transition to a eutrophic state. | | | | | | | | | | | | Structure of the Mediator head module ▶ | | | | Laurent Larivière, Clemens Plaschka, Martin Seizl, Larissa Wenzeck, Fabian Kurth et al. | | | | The crystal structure of the Mediator head module from the fission yeast Schizosaccharomyces pombe is solved at 3.4 Å resolution. | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Non-Fermi-liquid d-wave metal phase of strongly interacting electrons ▶ | | | | Hong-Chen Jiang, Matthew S. Block, Ryan V. Mishmash, James R. Garrison, D. N. Sheng et al. | | | | An explicit theoretical construction of a metallic non-Fermi liquid ground state opens a route to attack long-standing problems such as the ‘strange metal’ phase of high-temperature superconductors. | | | | | | | | | | | | | | | | Structure of a presenilin family intramembrane aspartate protease ▶ | | | | Xiaochun Li, Shangyu Dang, Chuangye Yan, Xinqi Gong, Jiawei Wang et al. | | | | Presenilin, the catalytic component of γ-secretase, cleaves amyloid precursor protein into short peptides that form the plaques that are found in the brains of patients with Alzheimer’s disease; here the structure of a presenilin homologue is described, which will serve as a framework for understanding the mechanisms of action of presenilin and γ-secretase. | | | | | | | | | | | | | | | | FMRP targets distinct mRNA sequence elements to regulate protein expression ▶ | | | | Manuel Ascano, Neelanjan Mukherjee, Pradeep Bandaru, Jason B. Miller, Jeffrey D. Nusbaum et al. | | | | RNA-recognition elements are identified for the fragile-X-syndrome-associated RNA-binding protein FMRP, in addition to its target messenger RNAs; although many of FMRP gene targets discovered are involved in brain function and autism spectrum disorder, a proportion are also dysregulated in mouse ovaries, suggesting cross-regulation of signalling pathways in different tissues. | | | | | | | | | | | | High-resolution crystal structure of human protease-activated receptor 1 ▶ | | | | Cheng Zhang, Yoga Srinivasan, Daniel H. Arlow, Juan Jose Fung, Daniel Palmer et al. | | | | The X-ray crystal structure of the human G-protein-coupled receptor protease-activated receptor 1 (PAR1) bound to the antagonist vorapaxar is solved, revealing an unusual method of drug binding that should facilitate the development of improved PAR1-selective antagonists. | | | | | | | | | | | | Dynamical age differences among coeval star clusters as revealed by blue stragglers ▶ | | | | F. R. Ferraro, B. Lanzoni, E. Dalessandro, G. Beccari, M. Pasquato et al. | | | | Globular clusters can be grouped into a few distinct families on the basis of the radial distribution of ‘blue stragglers’, stars with masses greater than those at the turn-off point on the main sequence; this grouping can yield a direct measure of the cluster’s dynamical age purely from observed properties. | | | | | | | | | | | | Evaporative cooling of the dipolar hydroxyl radical ▶ | | | | Benjamin K. Stuhl, Matthew T. Hummon, Mark Yeo, Goulven Quéméner, John L. Bohn et al. | | | | Evaporative cooling of molecules has not been achieved so far, owing to unfavourable collision properties and trap losses; microwave-forced evaporative cooling of hydroxyl molecules loaded in a magnetic quadrupole trap is now reported. | | | | | | | | | | | | The Josephson heat interferometer ▶ | | | | Francesco Giazotto & María José Martínez-Pérez | | | | A thermal analogue of a superconducting quantum interference device (SQUID, widely used to measure small magnetic fields) is realized, in which the flow of heat between the superconductors is dependent on the quantum phase difference between them. | | | | | | | | | | | | Fractionalized excitations in the spin-liquid state of a kagome-lattice antiferromagnet ▶ | | | | Tian-Heng Han, Joel S. Helton, Shaoyan Chu, Daniel G. Nocera, Jose A. Rodriguez-Rivera et al. | | | | Neutron scattering measurements on single-crystal samples of the mineral herbertsmithite, which is a spin-1/2 kagome-lattice antiferromagnet, provide evidence of fractionalized spin excitations at low temperatures, indicating that the ground state of herbertsmithite may be a quantum spin liquid. | | | | | | | | | | | | | | | | Laboratory measurements of the viscous anisotropy of olivine aggregates ▶ | | | | L. N. Hansen, M. E. Zimmerman & D. L. Kohlstedt | | | | Measurements of the viscous anisotropy of highly deformed polycrystalline olivine find it to be approximately an order of magnitude larger than that predicted by grain-scale simulations; the maximum degree of anisotropy is reached at geologically low shear strain, such that deforming regions of the Earth’s upper mantle should exhibit significant viscous anisotropy. | | | | | | | | | | | | Flickering gives early warning signals of a critical transition to a eutrophic lake state ▶ | | | | Rong Wang, John A. Dearing, Peter G. Langdon, Enlou Zhang, Xiangdong Yang et al. | | | | Critical transitions in experimental and theoretical systems can be anticipated on the basis of specific warning signs, with ‘critical slowing down’ being the best studied; long-term data from a real system, a Chinese lake, now show that a flickering phenomenon can be observed up to 20 years before the critical transition to a eutrophic state. | | | | | | | | | | | | Structure of the Mediator head module ▶ | | | | Laurent Larivière, Clemens Plaschka, Martin Seizl, Larissa Wenzeck, Fabian Kurth et al. | | | | The crystal structure of the Mediator head module from the fission yeast Schizosaccharomyces pombe is solved at 3.4 Å resolution. | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Laboratory measurements of the viscous anisotropy of olivine aggregates ▶ | | | | L. N. Hansen, M. E. Zimmerman & D. L. Kohlstedt | | | | Measurements of the viscous anisotropy of highly deformed polycrystalline olivine find it to be approximately an order of magnitude larger than that predicted by grain-scale simulations; the maximum degree of anisotropy is reached at geologically low shear strain, such that deforming regions of the Earth’s upper mantle should exhibit significant viscous anisotropy. | | | | | | | | | | | | Flickering gives early warning signals of a critical transition to a eutrophic lake state ▶ | | | | Rong Wang, John A. Dearing, Peter G. Langdon, Enlou Zhang, Xiangdong Yang et al. | | | | Critical transitions in experimental and theoretical systems can be anticipated on the basis of specific warning signs, with ‘critical slowing down’ being the best studied; long-term data from a real system, a Chinese lake, now show that a flickering phenomenon can be observed up to 20 years before the critical transition to a eutrophic state. | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Psoriasis uncovered ▶ | | | | Science is finally getting to grips with this enigmatic autoimmune disease. | | | | | | | | | | | | Immunology: A many layered thing ▶ | | | | No mere passive barrier, the skin is being revealed to be an active part of the immune system. Researchers are now starting to understand its role in driving psoriasis. | | | | | | | | | | | | Perspective: Don't be superficial ▶ | | | | Severe psoriasis carries cardiovascular risks. Dermatologists should consider more than just patients' outer layers, argues Henning Boehncke. | | | | | | | | | | | | Genetics: Deep exploration ▶ | | | | Recent discoveries are redefining the role of the immune system in psoriasis, and may help to unravel the mystery of the disease's origins. | | | | | | | | | | | | Therapeutics: Silencing psoriasis ▶ | | | | The latest drugs hold fantastic promise for people with severe psoriasis. But where are the treatment options for the far larger number with less serious cases? | | | | | | | | | | | | Microbiome: The surface brigade ▶ | | | | Our skin is home to thousands of species of bacteria — and when these microscopic societies are disrupted, skin infections can arise. | | | | | | | | | | | | | | | | Q&A: Under their skin ▶ | | | | Psoriasis can have a profound impact on patients' emotional and social lives. Christopher Griffiths, a dermatologist at the University of Manchester in the United Kingdom, discusses the disease's psychological fallout and its links with stress. | | | | | | | | | | | | | | | |
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| | | | | | | | | | | | | | | | Guiding lights ▶ | | | | The three Nordic winners of this year's Nature mentoring awards respond exceptionally to scientific and personal challenges, says Philip Campbell. | | | | | | | | | | | | | | | | Turning point: Julia Greer ▶ | | | | Materials scientist hopes tenure will allow her time for new research directions — and to play the piano. | | | | | | | | | | | | | | | | Mentoring analysed ▶ | | | | The best mentors listen closely, help to set goals and have useful networks. | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Careers related news & comment | | | | | | | | | | | | | | | |
| | | | | |  naturejobs.com Science jobs of the week | | | | | | | | | | | | | | | | | | | | No matter what your career stage, student, postdoc or senior scientist, you will find articles on naturejobs.com to help guide you in your science career. Keep up-to-date with the latest sector trends, vote in our reader poll and sign-up to receive the monthly Naturejobs newsletter. | | | | | | | | | | • Nature events featured events | | | | | | | | | |  natureevents featured events | | | | | | | | | | Nature events is the premier resource for scientists looking for the latest scientific conferences, courses, meetings and symposia. Featured across Nature Publishing Group journals and centrally at natureevents.com it is an essential reference guide to scientific events worldwide. | | | | | |
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