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| | | Specials - Insight: Metabolism and disease | | | | Many of the most common and debilitating diseases, such as obesity, diabetes and cancer, are manifestations of abnormal metabolism. This Insight supplement features six reviews that highlight the latest research on the molecular mechanisms that underlie metabolism and its associated pathologies. ▼ more | | | | | | | | | Analyses of pig genomes provide insight into porcine demography and evolution | A high-quality draft genome sequence a female domestic Duroc pig is published this week. Comparisons of the genomes of wild and domestic pigs shed light on the evolutionary relationship between European and Asian wild boars. The authors identify many possible disease-causing gene variants, extending the potential of the pig as a biomedical model, and an analysis of endogenous porcine retroviruses, essential knowledge of importance to the possible use of pigs as organ and tissue donors in xenotransplantation. | | | | | | | | | Spontaneous motion in hierarchically assembled active matter | Autonomous motion is a characteristic of living organisms; by consuming energy, cells and their components can generate motion without the need for externally applied force. This paper reports the creation of polymer gels, liquid crystals and emulsions that mimic this behaviour using biological molecules as building blocks. The authors assemble microtubules into hierarchical bundles and then into percolating networks. This work raises the exciting possibility that chaotic behaviour of this type could be engineered to be tunable and controllable. | | | | | | | | | | | | | | | Academy of Military Medical Sciences - Celebrating 60 years of research at one of China's leading organizations for medical science. The Academy of Military Medical Sciences (AMMS) in Beijing has developed beyond its military heritage to become a world leader in medical science with a string of achievements in both military and civilian applications that have resonated around the globe. Find out more about the AMMS in Part 4 of the five-part series of this special sponsor feature on nature.com. | | | | | | | | | | | | | | An ultraviolet-radiation-independent pathway to melanoma carcinogenesis in the red hair/fair skin background | Individuals with pale skin and red hair may need to worry about more than just sun exposure in relation to their increased risk of skin cancer. The 'redhead' phenotype is often associated with a polymorphism in the gene encoding the melanocortin 1 receptor (Mc1r) that reduces its ability to stimulate the production of black/brown pigment eumelanin from the red/yellow pigment pheomelanin. Experiments in a mouse model show that inactivation of Mc1r promotes melanoma formation in the presence of BRAFV600E, the most common melanoma oncoprotein, independently of exposure to ultraviolet radiation. | | | | | | | | | | In this week's podcast: pig geneticists go the whole hog, the link between light and mood, and are women really born with all their eggs? | | | | | | |
| | | | | | | | | | | | | | | | | America's carbon compromise ▶ | | | As looming tax increases and budget cuts threaten to plunge the US economy back into recession, Congress should take a hard look at introducing a carbon tax as an important part of the solution. | | | | | | | | A shaky restart ▶ | | | Japan still has lessons to learn from Fukushima if it is to convince the public about nuclear energy. | | | | | | | | Save scientific sites ▶ | | | The push to conserve cultural-heritage sites must not leave out areas of interest to science. | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Reproductive biology: Fertile mind ▶ | | | Jonathan Tilly defied decades of dogma by suggesting that women can make new eggs throughout their lives. Now some of his critics are taking a second look. | | | | | | | | Simulation: Quantum leaps ▶ | | | Fully fledged quantum computers are still a long way off. But devices that can simulate quantum systems are proving uniquely useful. | | | | | | | | | | | Computing: Secure the Internet ▶ | | | Software engineers must close the loophole used to intercept online communications, say Ben Laurie and Cory Doctorow. | | | | | | | | | | | | | | | | | | | | Science fiction: Curtains for space opera? ▶ | | | Since July, astronomers have killed off one trope of science fiction and given fresh life to another. Leigh Phillips gets Mars Trilogy author Kim Stanley Robinson's reaction. | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
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| | | | | | | | | | | | | | | | | | | | | | | | | Interleukin receptor activates a MYD88–ARNO–ARF6 cascade to disrupt vascular stability ▶ | | | Weiquan Zhu, Nyall R. London, Christopher C. Gibson, Chadwick T. Davis, Zongzhong Tong et al. | | | Interleukin-1β-induced disruption to endothelial stability and vascular permeability in a human in vitro model is shown to be independent of downstream nuclear factor-κB activation, relying instead on a MYD88–ARNO–ARF6 signalling cascade; inhibiting proteins involved in this pathway is shown to improve outcomes in animal models of inflammatory disease. | | | | | | | | Regulation of ISWI involves inhibitory modules antagonized by nucleosomal epitopes ▶ | | | Cedric R. Clapier & Bradley R. Cairns | | | Two separate regulatory regions on the Drosophila chromatin remodeller ISWI are defined, AutoN and NegC, which negatively regulate ATP hydrolysis and the coupling of ATP hydrolysis to productive DNA translocation, respectively; epitopes on nucleosomes activate ISWI by inhibiting these negative regulatory domains, ensuring that remodelling occurs only in the appropriate chromatin context. | | | | | | | | | | | Tet1 controls meiosis by regulating meiotic gene expression ▶ | | | Shinpei Yamaguchi, Kwonho Hong, Rui Liu, Li Shen, Azusa Inou, Dinh Diep et al. | | | A loss-of-function approach in mice is used to show that the methylcytosine dioxygenase Tet1 has a role in regulating meiosis and meiotic gene activation in female germ cells; Tet1 deficiency does not greatly affect genome-wide demethylation but has a more specific effect on the expression of a subset of meiotic genes. | | | | | | | | | | | RNAi triggered by specialized machinery silences developmental genes and retrotransposons ▶ | | | Soichiro Yamanaka, Sameet Mehta, Francisca E. Reyes-Turcu, Fanglei Zhuang, Ryan T. Fuchs, Yikang Rong et al. | | | In the fission yeast Schizosaccharomyces pombe RNA interference (RNAi) machinery promotes heterochromatin assembly and silencing of centromeric repeats; here it is shown that RNAi participates in silencing other genomic regions, such as sexual differentiation genes and retrotransposons, and this process is regulated by developmental and environmental signals. | | | | | | | | | | | Analyses of pig genomes provide insight into porcine demography and evolution OPEN ▶ | | | Martien A. M. Groenen, Alan L. Archibald, Hirohide Uenishi, Christopher K. Tuggle, Yasuhiro Takeuchi et al. | | | This study presents the assembly and analysis of the genome sequence of a female domestic Duroc pig and a comparison with the genomes of wild and domestic pigs from Europe and Asia; the results shed light on the evolutionary relationship between European and Asian wild boars. | | | | | | | | Pancreatic cancer genomes reveal aberrations in axon guidance pathway genes ▶ | | | Andrew V. Biankin, Nicola Waddell, Karin S. Kassahn, Marie-Claude Gingras, Lakshmi B. Muthuswamy et al. | | | Exome sequencing and copy number analysis are used to define genomic aberrations in early sporadic pancreatic ductal adenocarcinoma; among the findings are mutations in genes involved in chromatin modification and DNA damage repair, and frequent and diverse somatic aberrations in genes known as embryonic regulators of axon guidance. | | | | | | | | Broad and potent neutralization of HIV-1 by a gp41-specific human antibody ▶ | | | Jinghe Huang, Gilad Ofek, Leo Laub, Mark K. Louder, Nicole A. Doria-Rose et al. | | | A novel neutralizing antibody from a healthy HIV-1-infected donor that is specific for the membrane proximal region of gp41 is reported; the antibody has high potency and breadth, is not autoreactive and does not bind phospholipids. | | | | | | | | The Mu transpososome structure sheds light on DDE recombinase evolution ▶ | | | Sherwin P. Montaño, Ying Z. Pigli & Phoebe A. Rice | | | The structure of the bacteriophage transposase MuA bound to DNA sequences that mimic both the transposon ends and the target DNA ends is solved; the picture of this synaptic complex illustrates the intricacy of Mu transposition, and exposes the architectural diversity among DDE recombinases in complex with substrate DNAs. | | | | | | | | The global diversity of birds in space and time ▶ | | | W. Jetz, G. H. Thomas, J. B. Joy, K. Hartmann & A. O. Mooers | | | The authors analyse the tempo and geography of diversification for all 10,000 species of birds: diversification has sped up over time, bursts are spread out across the tree and across the world, and high rates are not concentrated in the tropics. | | | | | | | | An ultraviolet-radiation-independent pathway to melanoma carcinogenesis in the red hair/fair skin background ▶ | | | Devarati Mitra, Xi Luo, Ann Morgan, Jin Wang, Mai P. Hoang et al. | | | Individuals with the red hair/fair skin phenotype usually carry a polymorphism in the gene encoding the melanocortin 1 receptor (Mc1r) that results in the production of pigment containing a high pheomelanin-to-eumelanin ratio; here it is shown in a mouse model that inactivation of Mc1r promotes melanoma formation in the presence of the Braf oncogene, thus suggesting that pheomelanin synthesis is carcinogenic by an ultraviolet-radiation-independent mechanism. | | | | | | | | | | | Serine is a natural ligand and allosteric activator of pyruvate kinase M2 ▶ | | | Barbara Chaneton, Petra Hillmann, Liang Zheng, Agnès C. L. Martin, Oliver D. K. Maddocks et al. | | | The M2 isoform of pyruvate kinase (PKM2) is a key glycolytic enzyme that is overexpressed in cancer cells; here, serine is shown to bind to and directly activate PKM2, and the resulting reduction in enzyme activity under serine-deprivation conditions is shown to lead to the diversion of glucose-derived carbon to promote serine biosynthesis required for cell proliferation. | | | | | | | | | | | A bimodular mechanism of calcium control in eukaryotes ▶ | | | Henning Tidow, Lisbeth R. Poulsen, Antonina Andreeva, Michael Knudsen, Kim L. Hein et al. | | | Detailed characterization of the regulatory domain of a plasma-membrane Ca2+-ATPase — a calcium pump — in complex with calmodulin results in a two-step structural model that explains how calmodulin-mediated regulation of pump activation affords highly responsive control over the intracellular calcium concentration in eukaryotes. | | | | | | | | Endothelial cell expression of haemoglobin α regulates nitric oxide signalling ▶ | | | Adam C. Straub, Alexander W. Lohman, Marie Billaud, Scott R. Johnstone, Scott T. Dwyer et al. | | | This study presents a new model for the regulation of nitric oxide signalling in endothelial cells; the oxidation state of endothelial haemoglobin α, controlled by cytochrome B5 reductase 3, regulates nitric oxide bioactivity and diffusion towards its vascular smooth muscle targets. | | | | | | | | Structural insight into the type-II mitochondrial NADH dehydrogenases ▶ | | | Yue Feng, Wenfei Li, Jian Li, Jiawei Wang, Jingpeng Ge et al. | | | Analysis of the respective crystal structures of the yeast single-component type-II NADH dehydrogenase Ndi1 in its substrate-free form and when bound to NADH, ubiquinone and NADH–ubiquinone shows that Ndi1 homodimerization through its carboxy-terminal domain is critical for its catalytic activity and membrane targeting. | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
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| | | | | | | | | | | | | | | | Regulation of ISWI involves inhibitory modules antagonized by nucleosomal epitopes ▶ | | | Cedric R. Clapier & Bradley R. Cairns | | | Two separate regulatory regions on the Drosophila chromatin remodeller ISWI are defined, AutoN and NegC, which negatively regulate ATP hydrolysis and the coupling of ATP hydrolysis to productive DNA translocation, respectively; epitopes on nucleosomes activate ISWI by inhibiting these negative regulatory domains, ensuring that remodelling occurs only in the appropriate chromatin context. | | | | | | | | | | | The Mu transpososome structure sheds light on DDE recombinase evolution ▶ | | | Sherwin P. Montaño, Ying Z. Pigli & Phoebe A. Rice | | | The structure of the bacteriophage transposase MuA bound to DNA sequences that mimic both the transposon ends and the target DNA ends is solved; the picture of this synaptic complex illustrates the intricacy of Mu transposition, and exposes the architectural diversity among DDE recombinases in complex with substrate DNAs. | | | | | | | | Serine is a natural ligand and allosteric activator of pyruvate kinase M2 ▶ | | | Barbara Chaneton, Petra Hillmann, Liang Zheng, Agnès C. L. Martin, Oliver D. K. Maddocks et al. | | | The M2 isoform of pyruvate kinase (PKM2) is a key glycolytic enzyme that is overexpressed in cancer cells; here, serine is shown to bind to and directly activate PKM2, and the resulting reduction in enzyme activity under serine-deprivation conditions is shown to lead to the diversion of glucose-derived carbon to promote serine biosynthesis required for cell proliferation. | | | | | | | | A bimodular mechanism of calcium control in eukaryotes ▶ | | | Henning Tidow, Lisbeth R. Poulsen, Antonina Andreeva, Michael Knudsen, Kim L. Hein et al. | | | Detailed characterization of the regulatory domain of a plasma-membrane Ca2+-ATPase — a calcium pump — in complex with calmodulin results in a two-step structural model that explains how calmodulin-mediated regulation of pump activation affords highly responsive control over the intracellular calcium concentration in eukaryotes. | | | | | | | | Structural insight into the type-II mitochondrial NADH dehydrogenases ▶ | | | Yue Feng, Wenfei Li, Jian Li, Jiawei Wang, Jingpeng Ge et al. | | | Analysis of the respective crystal structures of the yeast single-component type-II NADH dehydrogenase Ndi1 in its substrate-free form and when bound to NADH, ubiquinone and NADH–ubiquinone shows that Ndi1 homodimerization through its carboxy-terminal domain is critical for its catalytic activity and membrane targeting. | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Sisyphus cooling of electrically trapped polyatomic molecules ▶ | | | Martin Zeppenfeld, Barbara G. U. Englert, Rosa Glöckner, Alexander Prehn, Manuel Mielenz et al. | | | A general method of cooling polyatomic molecules to ultracold temperatures is reported; the optoelectrical cooling technique removes kinetic energy via a Sisyphus effect, effectively causing the molecules to continually ‘climb’ a hill of potential energy. | | | | | | | | | | | | | | Quantum-dot spin–photon entanglement via frequency downconversion to telecom wavelength ▶ | | | Kristiaan De Greve, Leo Yu, Peter L. McMahon, Jason S. Pelc, Chandra M. Natarajan et al. | | | Entanglement of the spin of an electron in a semiconductor quantum dot with a single photon is reported, and verified by means of time-resolved frequency downconversion to a telecommunications wavelength; this process is an essential requirement for future quantum networks. | | | | | | | | Observation of entanglement between a quantum dot spin and a single photon ▶ | | | W. B. Gao, P. Fallahi, E. Togan, J. Miguel-Sanchez & A. Imamoglu | | | Fast, single-photon detection enables the observation of entanglement between a stationary quantum bit (a single quantum dot spin) and a propagating quantum bit (a single photon), marking a first step towards the implementation of a quantum network with nodes consisting of semiconductor spin quantum bits. | | | | | | | | Spontaneous motion in hierarchically assembled active matter ▶ | | | Tim Sanchez, Daniel T. N. Chen, Stephen J. DeCamp, Michael Heymann & Zvonimir Dogic | | | Active materials are hierarchically assembled, starting from extensile microtubule bundles, to form emulsions with unexpected collective biomimetic properties such as autonomous motility. | | | | | | | | Little change in global drought over the past 60 years ▶ | | | Justin Sheffield, Eric F. Wood & Michael L. Roderick | | | A physically based approach to drought modelling shows that there has been little change in drought from 1950 to 2008, contradicting previous work that suggested an increase in recent years. | | | | | | | | Slowdown of the Walker circulation driven by tropical Indo-Pacific warming ▶ | | | Hiroki Tokinaga, Shang-Ping Xie, Clara Deser, Yu Kosaka & Yuko M. Okumura | | | Changes in the Walker circulation, an enormous east–west atmospheric circulation over the equatorial Pacific Ocean, are shown to be driven by changes in zonal sea surface temperature gradients rather than by changes in the hydrological cycle, as previously suggested. | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Little change in global drought over the past 60 years ▶ | | | Justin Sheffield, Eric F. Wood & Michael L. Roderick | | | A physically based approach to drought modelling shows that there has been little change in drought from 1950 to 2008, contradicting previous work that suggested an increase in recent years. | | | | | | | | Slowdown of the Walker circulation driven by tropical Indo-Pacific warming ▶ | | | Hiroki Tokinaga, Shang-Ping Xie, Clara Deser, Yu Kosaka & Yuko M. Okumura | | | Changes in the Walker circulation, an enormous east–west atmospheric circulation over the equatorial Pacific Ocean, are shown to be driven by changes in zonal sea surface temperature gradients rather than by changes in the hydrological cycle, as previously suggested. | | | | | | | | | | | | | | | | | | | | | | | |
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