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| | | Special: G protein-coupled receptors | | | | G protein-coupled receptors (GPCRs) are membrane proteins that are involved in a broad range of biological processes, and a large number of clinically used drugs elicit their biological effect(s) via a GPCR. Structural information about GPCRs was very limited until 2007, and papers describing new GPCR structures and previously unseen conformational states have dramatically increased in the past few years. In this online special, we present a selection of recently published Nature papers that involve the structures of various GPCRs. Understanding the conformational changes that occur in these proteins when a ligand binds to and activates the receptor should facilitate the development of potential drugs with fewer side effects and more favorable pharmacological properties. ▼ more | | | | | | | Specials - Outlook: Diabetes | | | | About 350 million people — 5% of the world's population — are afflicted by either type 1 diabetes, an autoimmune disorder, or type 2 diabetes, largely linked to lifestyle. Nature Outlook: Diabetes examines the latest research into the causes, therapy, prevention and impact of these devastating diseases. ▼ more | | | | | | | | | Earth-like sand fluxes on Mars | Data from the Mars Reconnaissance Orbiter have been used to measure the migration of sand ripples across the Nili Patera dune field in the martian southern hemisphere. The dunes move surprisingly large volumes of sand, equivalent to those seen in extreme desert conditions on Earth. | | | | | | | | | | | | | | | | | | | Extended leaf phenology and the autumn niche in deciduous forest invasions | This study of 73 shrub and vine species growing in the understory in deciduous forests in the eastern United States shows that non-native species have an autumn growing season that is on average 4 weeks longer than that of natives. The invasive species may be driving a seasonal redistribution of forest productivity to rival climate change in its impact on forest processes. | | | | | | | | | | In this week's podcast: the transits of Venus, paralysed patients move a robotic arm with their thoughts, and 'superflares'. Plus, the best of the rest from this week's Nature. | | | | | In this week's video: Cathy Hutchinson has been unable to move her arms or legs for 15 years. But using the most advanced brain-machine interface ever developed, she can steer a robotic arm towards a bottle and drink her morning coffee. See how Cathy does it and hear from the team behind this pioneering clinical trial. | | | | | | |
| | | | | | | | | | | | | | | | | | | | | | | | | Misplaced childhood ▶ | | | The US National Institutes of Health should rethink plans to limit a nationwide study of children. It must not miss a rare opportunity to probe the causes of childhood diseases. | | | | | | | | Needless conflict ▶ | | | Independent experts should be kept from undue suspicion as well as undue influence. | | | | | | | | Honest opinions ▶ | | | Proposals for a UK law on defamation highlight the power of scientific protest. | | | | | | | | | | | Reach out to defend evolution ▶ | | | Creationists seize on any perceived gaps in our knowledge of evolutionary processes. But scientists can and should fight back, says Russell Garwood. | | | | | | | | | | | Seven days: 11–17 May 2012 ▶ | | | The week in science: Scientific journals to be protected in UK libel reform; Mars rover awakens; and the Global Fund emerges from a fund-raising crisis. | | | | | | | | | | | | | | | | | | | | Malaria surge feared ▶ | | | The WHO releases action plan to tackle the spread of insecticide-resistant mosquitoes. | | | | | | | | | | | | | | | | | Rise of the coyote: The new top dog ▶ | | | Shape-shifting coyotes have evolved to take advantage of a landscape transformed by people. Scientists are now discovering just how wily the creatures are. | | | | | | | | | | | | | | | | | Transit of Venus: Last chance to see ▶ | | | The June 2012 transit of Venus across the Sun offers an opportunity to check our methods for spotting distant planets crossing far-away stars, says Jay M. Pasachoff. | | | | | | | | | | | | | | | | | | | | Q&A: Soundscape explorer ▶ | | | Bioacoustician Bernie Krause has travelled the world for decades to gather animal sounds for his Wild Sanctuary archive (www.wildsanctuary.com). Following the release of his book about this work, The Great Animal Orchestra, he talks about the calls of the wild. | | | | | | | | | | | | | | | | | | | | | | | | | | |
| | | | | | | | | | | | | | | | Peroxiredoxins are conserved markers of circadian rhythms ▶ | | | Rachel S. Edgar, Edward W. Green, Yuwei Zhao, Gerben van Ooijen, Maria Olmedo et al. | | | Daily oxidation–reduction cycles of peroxiredoxin proteins are shown to be conserved in all domains of life, including Bacteria, Archaea and Eukaryota. | | | | | | | | | | | | | | | | | | | | | | | Heart repair by reprogramming non-myocytes with cardiac transcription factors ▶ | | | Kunhua Song, Young-Jae Nam, Xiang Luo, Xiaoxia Qi, Wei Tan et al. | | | A combination of four transcription factors, GATA4, HAND2, MEF2C and TBX5, can reprogram fibroblasts into cardiac-like myocytes in vitro and in vivo; expression of these factors ameliorated cardiac function in mice that had suffered myocardial infarction. | | | | | | | | Fluoride ion encapsulation by Mg2+ ions and phosphates in a fluoride riboswitch ▶ | | | Aiming Ren, Kanagalaghatta R. Rajashankar & Dinshaw J. Patel | | | A riboswitch that binds fluoride was identified recently, which is surprising because both RNA and fluoride are negatively charged; here it is shown that the fluoride ion is coordinated to three positively charged magnesium ions, which are further encased in a negatively charged shell of RNA backbone phosphates and water molecules. | | | | | | | | Evolution of the chalcone-isomerase fold from fatty-acid binding to stereospecific catalysis ▶ | | | Micheline N. Ngaki, Gordon V. Louie, Ryan N. Philippe, Gerard Manning, Florence Pojer et al. | | | The diffusion limited stereospecific enzyme chalcone isomerase represents the adaptive evolution of a catalytically perfected enzyme from non-catalytic, fatty-acid-binding proteins (FAPs) with contemporary roles in plant fatty-acid metabolism as evidenced by altered fatty acid content and marked reproductive defects in Arabidopsis thaliana plants bearing FAP knockouts. | | | | | | | | α2δ expression sets presynaptic calcium channel abundance and release probability ▶ | | | Michael B. Hoppa, Beatrice Lana, Wojciech Margas, Annette C. Dolphin & Timothy A. Ryan | | | The voltage-gated calcium channel protein subunit α2δ is shown to control both the abundance of voltage-gated calcium channels and their coupling to the vesicular release of neurotransmitters into the synapse; because the α2δ family is a known target of potent analgesics, this study offers a new link between basic synaptic physiology and pain research in the clinic. | | | | | | | | Recurrent network activity drives striatal synaptogenesis ▶ | | | Yevgenia Kozorovitskiy, Arpiar Saunders, Caroline A. Johnson, Bradford B. Lowell & Bernardo L. Sabatini | | | Neurotransmitter release and activity are modulated in the striatum of mice to demonstrate that the balance of activity within the two antagonistic, inhibitory pathways co-mingled in this nucleus regulates excitatory innervation of the basal ganglia during development. | | | | | | | | | | | | | | | | | | | | Structure of the human κ-opioid receptor in complex with JDTic ▶ | | | Huixian Wu, Daniel Wacker, Mauro Mileni, Vsevolod Katritch, Gye Won Han et al. | | | The crystal structure of the human κ-opioid receptor in complex with an antagonist, JDTic, is determined, with potential importance for the design of new therapeutic agents. | | | | | | | | Cardiac angiogenic imbalance leads to peripartum cardiomyopathy ▶ | | | Ian S. Patten, Sarosh Rana, Sajid Shahul, Glenn C. Rowe, Cholsoon Jang et al. | | | Evidence from mice and humans indicates that peripartum cardiomyopathy (PPCM) is a vascular disease caused by excessive anti-angiogenic signalling in the peripartum period of pregnancy and that pre-eclampsia and multiple gestation are important risk factors for the development of PPCM. | | | | | | | | | | | KCTD13 is a major driver of mirrored neuroanatomical phenotypes of the 16p11.2 copy number variant ▶ | | | Christelle Golzio, Jason Willer, Michael E. Talkowski, Edwin C. Oh, Yu Taniguchi et al. | | | Overexpression of all 29 human transcripts of a region of the 16p11.2 chromosome in zebrafish embryos identifies KCTD13 as the message inducing the microcephaly phenotype associated with 16p11.2 duplication, whereas its suppression yields the macrocephalic phenotype associated with the reciprocal deletion, suggesting that KCTD13 is a major driver for the neurodevelopmental phenotypes associated with the 16p11.2 copy number variants. | | | | | | | | Restoration of grasp following paralysis through brain-controlled stimulation of muscles ▶ | | | C. Ethier, E. R. Oby, M. J. Bauman & L. E. Miller | | | A functional electrical stimulation system in primates that is controlled by recordings made from microelectrodes permanently implanted in the brain can be used to control the intensity of stimulation of muscles that are temporarily paralysed by pharmacological motor nerve blockade, thereby restoring voluntary control of the affected muscles; this is a major advance towards similar restoration of hand function in human patients with spinal cord injury. | | | | | | | | | | | Topological domains in mammalian genomes identified by analysis of chromatin interactions ▶ | | | Jesse R. Dixon, Siddarth Selvaraj, Feng Yue, Audrey Kim, Yan Li et al. | | | The three-dimensional organization of the human and mouse genomes in embryonic stem cells and terminally differentiated cell types is investigated, revealing that large, megabase-sized chromatin interaction domains are a pervasive and conserved structural feature of genome organization. | | | | | | | | | | | RNF12 initiates X-chromosome inactivation by targeting REX1 for degradation ▶ | | | Cristina Gontan, Eskeatnaf Mulugeta Achame, Jeroen Demmers, Tahsin Stefan Barakat, Eveline Rentmeester et al. | | | The pluripotency factor REX1 is a key target of RNF12 during X-chromosome inactivation; degradation of REX1 by RNF12 leads to relief of its inhibitory action on X-chromosome inactivation. | | | | | | | | | | | | | | Structure of the δ-opioid receptor bound to naltrindole ▶ | | | Sébastien Granier, Aashish Manglik, Andrew C. Kruse, Tong Sun Kobilka, Foon Sun Thian et al. | | | The X-ray crystal structure of the mouse δ-opioid receptor in complex with the subtype-selective antagonist naltrindole is reported. | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| | | | | | THE TARA OCEANS EXPEDITION A Special Podcast In a 2.5 year journey across the globe's oceans, the TARA OCEANS expedition has collected unique information on the biodiversity and biogeography of the marine ecosystem. Project co-director Eric Karsenti shares his excitement about this exceptional human and scientific adventure and explains how researchers will analyze the data to better understand life on our planet. Listen to our FREE podcast now! | | | | | | | | |
| | | | | | | | | | | | | | | | Peroxiredoxins are conserved markers of circadian rhythms ▶ | | | Rachel S. Edgar, Edward W. Green, Yuwei Zhao, Gerben van Ooijen, Maria Olmedo et al. | | | Daily oxidation–reduction cycles of peroxiredoxin proteins are shown to be conserved in all domains of life, including Bacteria, Archaea and Eukaryota. | | | | | | | | | | | Fluoride ion encapsulation by Mg2+ ions and phosphates in a fluoride riboswitch ▶ | | | Aiming Ren, Kanagalaghatta R. Rajashankar & Dinshaw J. Patel | | | A riboswitch that binds fluoride was identified recently, which is surprising because both RNA and fluoride are negatively charged; here it is shown that the fluoride ion is coordinated to three positively charged magnesium ions, which are further encased in a negatively charged shell of RNA backbone phosphates and water molecules. | | | | | | | | Evolution of the chalcone-isomerase fold from fatty-acid binding to stereospecific catalysis ▶ | | | Micheline N. Ngaki, Gordon V. Louie, Ryan N. Philippe, Gerard Manning, Florence Pojer et al. | | | The diffusion limited stereospecific enzyme chalcone isomerase represents the adaptive evolution of a catalytically perfected enzyme from non-catalytic, fatty-acid-binding proteins (FAPs) with contemporary roles in plant fatty-acid metabolism as evidenced by altered fatty acid content and marked reproductive defects in Arabidopsis thaliana plants bearing FAP knockouts. | | | | | | | | | | | | | | Resolving the time when an electron exits a tunnelling barrier ▶ | | | Dror Shafir, Hadas Soifer, Barry D. Bruner, Michal Dagan, Yann Mairesse et al. | | | A method of laser-induced recollision permits measurement with attosecond resolution of the times at which the electron leaves the tunnelling barrier and discriminates between the ionization times of two carbon dioxide orbitals. | | | | | | | | Light-induced liquid crystallinity ▶ | | | Tamas Kosa, Ludmila Sukhomlinova, Linli Su, Bahman Taheri, Timothy J. White et al. | | | A new class of liquid crystals is reported that undergoes light-induced ordering and order-increasing phase transitions; possible applications include ophthalmic devices, such as variable transmission sunglasses. | | | | | | | | | | | | | | Structure of the δ-opioid receptor bound to naltrindole ▶ | | | Sébastien Granier, Aashish Manglik, Andrew C. Kruse, Tong Sun Kobilka, Foon Sun Thian et al. | | | The X-ray crystal structure of the mouse δ-opioid receptor in complex with the subtype-selective antagonist naltrindole is reported. | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Superflares on solar-type stars ▶ | | | Hiroyuki Maehara, Takuya Shibayama, Shota Notsu, Yuta Notsu, Takashi Nagao et al. | | | Observations of superflares on solar-type stars indicate that they are associated with much larger starspots than appear on the Sun, occur more frequently on rapidly rotating stars and, contrary to a previous proposal, are not frequently associated with hot Jupiters. | | | | | | | | | | | | | | Resolving the time when an electron exits a tunnelling barrier ▶ | | | Dror Shafir, Hadas Soifer, Barry D. Bruner, Michal Dagan, Yann Mairesse et al. | | | A method of laser-induced recollision permits measurement with attosecond resolution of the times at which the electron leaves the tunnelling barrier and discriminates between the ionization times of two carbon dioxide orbitals. | | | | | | | | Light-induced liquid crystallinity ▶ | | | Tamas Kosa, Ludmila Sukhomlinova, Linli Su, Bahman Taheri, Timothy J. White et al. | | | A new class of liquid crystals is reported that undergoes light-induced ordering and order-increasing phase transitions; possible applications include ophthalmic devices, such as variable transmission sunglasses. | | | | | | | | | | | Thermal and electrical conductivity of iron at Earth’s core conditions ▶ | | | Monica Pozzo, Chris Davies, David Gubbins & Dario Alfè | | | First principles calculations of the thermal and electrical conductivities of liquid iron mixtures under Earth's core conditions suggest a relatively high adiabatic heat flux of 15 to16 terawatts at the core–mantle boundary, indicating that the top of the core must be thermally stratified. | | | | | | | | Restoration of grasp following paralysis through brain-controlled stimulation of muscles ▶ | | | C. Ethier, E. R. Oby, M. J. Bauman & L. E. Miller | | | A functional electrical stimulation system in primates that is controlled by recordings made from microelectrodes permanently implanted in the brain can be used to control the intensity of stimulation of muscles that are temporarily paralysed by pharmacological motor nerve blockade, thereby restoring voluntary control of the affected muscles; this is a major advance towards similar restoration of hand function in human patients with spinal cord injury. | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Earth-like sand fluxes on Mars ▶ | | | N. T. Bridges, F. Ayoub, J-P. Avouac, S. Leprince, A. Lucas et al. | | | Satellite images of a Martian dune field reveal unexpectedly high sand fluxes, suggesting rates of landscape modification similar to those on Earth. | | | | | | | | | | | Thermal and electrical conductivity of iron at Earth’s core conditions ▶ | | | Monica Pozzo, Chris Davies, David Gubbins & Dario Alfè | | | First principles calculations of the thermal and electrical conductivities of liquid iron mixtures under Earth's core conditions suggest a relatively high adiabatic heat flux of 15 to16 terawatts at the core–mantle boundary, indicating that the top of the core must be thermally stratified. | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Diabetes in numbers ▶ | | | The number of people living with, and dying of, diabetes across the world is shocking: 90 million Chinese live with diabetes and 1.3 million died in 2011; 23% of Qatari adults have developed diabetes. Here we chart the extent of the global epidemic and present some of the implications for national governments by Tony Scully. | | | | | | | | Immunomodulators: Cell savers ▶ | | | In type 1 diabetes, the immune system goes haywire and depletes insulin-producing cells. Drugs that interfere with this process could one day reverse the disease's course. | | | | | | | | | | | | | | | | | | | | | | | Perspective: Testing failures ▶ | | | Promising drugs to treat diabetes stumble in the latter stages of clinical testing. Thomas Mandrup-Poulsen explains why — and how to fix it. | | | | | | | | Prevention: Nipped in the bud ▶ | | | While type 1 diabetes might be promising ground for a vaccine, the most effective way to avoid type 2 remains good old-fashioned diet and exercise. | | | | | | | | | | | |
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| | | | | | | | | Going digital ▶ | | | Creating electronic textbooks requires ingenuity, teamwork and multimedia savvy. | | | | | | | | | | | Turning point: Mark Lawrence ▶ | | | After launching a career in Germany, sustainability institute director aims to help society by reducing pollution. | | | | | | | | | | | Careers related news & comment | | | | | | | | | | | | |
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