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The ISME Journal - Table of Contents alert Volume 6 Issue 6

TABLE OF CONTENTS

Volume 6, Issue 6 (June 2012)

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Original Articles

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Original Articles

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MICROBIAL POPULATION AND COMMUNITY ECOLOGY

The Western English Channel contains a persistent microbial seed bank

J Gregory Caporaso, Konrad Paszkiewicz, Dawn Field, Rob Knight and Jack A Gilbert

ISME J 2012 6: 1089-1093; advance online publication, November 10, 2011; 10.1038/ismej.2011.162

Abstract | Full Text

A metagenome of a full-scale microbial community carrying out enhanced biological phosphorus removal

Mads Albertsen, Lea Benedicte Skov Hansen, Aaron Marc Saunders, Per Halkjær Nielsen and Kåre Lehmann Nielsen

ISME J 2012 6: 1094-1106; advance online publication, December 15, 2011; 10.1038/ismej.2011.176

Abstract | Full Text

Temporal variation of β-diversity and assembly mechanisms in a bacterial metacommunity

Silke Langenheder, Mercè Berga, Örjan Östman and Anna J Székely

ISME J 2012 6: 1107-1114; advance online publication, December 8, 2011; 10.1038/ismej.2011.177

Abstract | Full Text

Linking activity, composition and seasonal dynamics of atmospheric methane oxidizers in a meadow soil

Pravin Malla Shrestha, Claudia Kammann, Katharina Lenhart, Bomba Dam and Werner Liesack

ISME J 2012 6: 1115-1126; advance online publication, December 22, 2011; 10.1038/ismej.2011.179

Abstract | Full Text

Freshwater bacterioplankton richness in oligotrophic lakes depends on nutrient availability rather than on species–area relationships

Jürg Brendan Logue, Silke Langenheder, Anders F Andersson, Stefan Bertilsson, Stina Drakare, Anders Lanzén and Eva S Lindström

ISME J 2012 6: 1127-1136; advance online publication, December 15, 2011; 10.1038/ismej.2011.184

Abstract | Full Text

454 Pyrosequencing reveals bacterial diversity of activated sludge from 14 sewage treatment plants

Tong Zhang, Ming-Fei Shao and Lin Ye

ISME J 2012 6: 1137-1147; advance online publication, December 15, 2011; 10.1038/ismej.2011.188

Abstract | Full Text

MICROBE-MICROBE AND MICROBE-HOST INTERACTIONS

Co-evolution with lytic phage selects for the mucoid phenotype of Pseudomonas fluorescens SBW25

Pauline Deirdre Scanlan and Angus Buckling

ISME J 2012 6: 1148-1158; advance online publication, December 22, 2011; 10.1038/ismej.2011.174

Abstract | Full Text

Corals shed bacteria as a potential mechanism of resilience to organic matter enrichment

Melissa Garren and Farooq Azam

ISME J 2012 6: 1159-1165; advance online publication, December 22, 2011; 10.1038/ismej.2011.180

Abstract | Full Text

Verminephrobacter eiseniae type IV pili and flagella are required to colonize earthworm nephridia

Glenn F J Dulla, Ruth A Go, David A Stahl and Seana K Davidson

ISME J 2012 6: 1166-1175; advance online publication, December 15, 2011; 10.1038/ismej.2011.183

Abstract | Full Text

Distinct and complex bacterial profiles in human periodontitis and health revealed by 16S pyrosequencing

Ann L Griffen, Clifford J Beall, James H Campbell, Noah D Firestone, Purnima S Kumar, Zamin K Yang, Mircea Podar and Eugene J Leys

ISME J 2012 6: 1176-1185; advance online publication, December 15, 2011; 10.1038/ismej.2011.191

Abstract | Full Text

INTEGRATED GENOMICS AND POST-GENOMICS APPROACHES IN MICROBIAL ECOLOGY

Genomic insights to SAR86, an abundant and uncultivated marine bacterial lineage

Chris L Dupont, Douglas B Rusch, Shibu Yooseph, Mary-Jane Lombardo, R Alexander Richter, Ruben Valas, Mark Novotny, Joyclyn Yee-Greenbaum, Jeremy D Selengut, Dan H Haft, Aaron L Halpern, Roger S Lasken, Kenneth Nealson, Robert Friedman and J Craig Venter

ISME J 2012 6: 1186-1199; advance online publication, December 15, 2011; 10.1038/ismej.2011.189

Abstract | Full Text

GEOMICROBIOLOGY AND MICROBIAL CONTRIBUTIONS TO GEOCHEMICAL CYCLES

Nitrite oxidation in the Namibian oxygen minimum zone

Jessika Füssel, Phyllis Lam, Gaute Lavik, Marlene M Jensen, Moritz Holtappels, Marcel Günter and Marcel MM Kuypers

ISME J 2012 6: 1200-1209; advance online publication, December 15, 2011; 10.1038/ismej.2011.178

Abstract | Full Text

MICROBIAL ECOLOGY AND FUNCTIONAL DIVERSITY OF NATURAL HABITATS

High-throughput isotopic analysis of RNA microarrays to quantify microbial resource use

Xavier Mayali, Peter K Weber, Eoin L Brodie, Shalini Mabery, Paul D Hoeprich and Jennifer Pett-Ridge

ISME J 2012 6: 1210-1221; advance online publication, December 8, 2011; 10.1038/ismej.2011.175

Abstract | Full Text

Microbial diversity of biofilm communities in microniches associated with the didemnid ascidian Lissoclinum patella

Lars Behrendt, Anthony W D Larkum, Erik Trampe, Anders Norman, Søren J Sørensen and Michael Kühl

ISME J 2012 6: 1222-1237; advance online publication, December 1, 2011; 10.1038/ismej.2011.181

Abstract | Full Text

Heterotrophic organisms dominate nitrogen fixation in the South Pacific Gyre

Hannah Halm, Phyllis Lam, Timothy G Ferdelman, Gaute Lavik, Thorsten Dittmar, Julie LaRoche, Steven D'Hondt and Marcel MM Kuypers

ISME J 2012 6: 1238-1249; advance online publication, December 15, 2011; 10.1038/ismej.2011.182

Abstract | Full Text

Viral infections stimulate the metabolism and shape prokaryotic assemblages in submarine mud volcanoes

Cinzia Corinaldesi, Antonio Dell'Anno and Roberto Danovaro

ISME J 2012 6: 1250-1259; advance online publication, December 15, 2011; 10.1038/ismej.2011.185

Abstract | Full Text

Biogeography and phylogenetic diversity of a cluster of exclusively marine myxobacteria

Thorsten Brinkhoff, Doreen Fischer, John Vollmers, Sonja Voget, Christine Beardsley, Sebastian Thole, Marc Mussmann, Brigitte Kunze, Irene Wagner-Döbler, Rolf Daniel and Meinhard Simon

ISME J 2012 6: 1260-1272; advance online publication, December 22, 2011; 10.1038/ismej.2011.190

Abstract | Full Text

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