Wednesday, April 18, 2012

Nature Reviews Genetics Contents May 2012 Volume 13 Number 5 pp 297-376

Nature Reviews Genetics


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TABLE OF CONTENTS
 
May 2012 Volume 13 Number 5

Nature Reviews Genetics cover
Impact Factor 32.745 *
In this issue
Research Highlights
Reviews
Perspectives


Also this month
Article Series:
Study designs
Non-coding RNA
Translational genetics
 Featured article:
Histone methylation: a dynamic mark in health, disease and inheritance
Eric L. Greer & Yang Shi




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RESEARCH HIGHLIGHTS

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Functional genomics: Complexities of occupancy and sequence
p297 | doi:10.1038/nrg3219
PDF


Adaptation: Malarial bet hedging
p298 | doi:10.1038/nrg3224
PDF


Developmental biology: Re-evaluating gut insulin instinct
p298 | doi:10.1038/nrg3225
PDF


Technology: Breeding vigour backwards
p300 | doi:10.1038/nrg3220
PDF


Cancer genomics: Constructing a 'cancerpaedia'
p300 | doi:10.1038/nrg3221
PDF


Genome evolution: Mapping recombination in chimpanzees
p301 | doi:10.1038/nrg3222
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Complex traits: Old meets new in obesity genetics
p301 | doi:10.1038/nrg3223
PDF



IN BRIEF

Bioinformatics: Personalized omics profiling | Genome biology: New family of DNA molecule found in mammals | Gene expression: Anti-Shine-Dalgarno regulation of translation | Transcriptomics: Long non-coding RNA stability | Epigenetics: Mapping histone modifications and DNA methylation together | Evo-devo: Stickleback genomes illuminate adaptive evolution | Small RNAs: Small RNAs in DNA repair | Complex traits: Imprinting meets maternal effects for birth weight control
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REVIEWS

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Article series: Study designs
Molecular phylogenetics: principles and practice
Ziheng Yang & Bruce Rannala
p303 | doi:10.1038/nrg3186
Phylogenetic analysis is pervading every field of biological study. The authors review and assess the main methods of phylogenetic analysis — including parsimony, distance, likelihood and Bayesian methods — and provide guidance for selecting the most appropriate approach and software package.
Abstract | Full Text | PDF


Article series: Study designs
Harnessing genomics and genome biology to understand malaria biology
Sarah K. Volkman, Daniel E. Neafsey, Stephen F. Schaffner, Daniel J. Park & Dyann F. Wirth
p315 | doi:10.1038/nrg3187
This Review describes how genome-wide analyses have provided various insights into the most lethal malarial parasite, Plasmodium falciparum, including determinants of antimalarial drug resistance. The authors also propose how genetic tools can be refined to monitor future therapeutic interventions.
Abstract | Full Text | PDF


Article series: Study designs
A beginner's guide to eukaryotic genome annotation
Mark Yandell & Daniel Ence
p329 | doi:10.1038/nrg3174
Although genome sequencing is becoming routine, genome annotation is becoming increasingly challenging. The authors provide an overview of the steps and software tools that are available for annotating eukaryotic genomes, and describe the best practices for sharing, quality checking and updating the annotation.
Abstract | Full Text | PDF


Histone methylation: a dynamic mark in health, disease and inheritance
Eric L. Greer & Yang Shi
p343 | doi:10.1038/nrg3173
This Review provides a broad overview of the regulation of and by histone methylation. A balance between dynamism and stability is highlighted by links to disease and ageing, and current studies are exploring these histone marks in the context of inheritance.
Abstract | Full Text | PDF | Supplementary information


Article series: Non-coding RNA
MicroRNA profiling: approaches and considerations
Colin C. Pritchard, Heather H. Cheng & Muneesh Tewari
p358 | doi:10.1038/nrg3198
Owing to the important role of microRNAs in gene regulation, profiling repertoires of expressed microRNAs can be informative in basic research and clinical settings. This Review describes the methods that are available for microRNA profiling and considerations for choosing among analytical options.
Abstract | Full Text | PDF | Supplementary information



 
PERSPECTIVES

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SCIENCE AND SOCIETY
From patients to partners: participant-centric initiatives in biomedical research
Jane Kaye, Liam Curren, Nick Anderson, Kelly Edwards, Stephanie M. Fullerton, Nadja Kanellopoulou, David Lund, Daniel G. MacArthur, Deborah Mascalzoni, James Shepherd, Patrick L. Taylor, Sharon F. Terry & Stefan F. Winter
p371 | doi:10.1038/nrg3218
Participant-centred initiatives use social media technologies to allow long-term interactive partnerships to be established between study participants and researchers. These varied initiatives improve research governance and quality and give participants greater knowledge of and control over how their data are used.
Abstract | Full Text | PDF


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