Tuesday, April 10, 2012

Nature Biotechnology Contents: Volume 30 pp 197 - 292

Nature Biotechnology


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TABLE OF CONTENTS

April 2012 Volume 30, Issue 4

In This Issue
Editorial
News
Bioentrepreneur
Correspondence
Features
News and Views
Research Highlights
Computational Biology
Research
Errata
Corrigendum
Careers and Recruitment

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In This Issue

Top

In this issue ppvii - viii
doi:10.1038/nbt.2192
Full Text | PDF

Editorial

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Reforming accelerated approval p293
doi:10.1038/nbt.2194
Proposed US legislation aiming to expand and expedite patient access to novel drugs represents a good start, but is unlikely to strongly boost approval numbers.
Full Text | PDF

News

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Oxford Nanopore announcement sets sequencing sector abuzz pp295 - 296
Michael Eisenstein
doi:10.1038/nbt0412-295
Full Text | PDF

Pharma incubates without strings p297
Brian Orelli
doi:10.1038/nbt0412-297b
Full Text | PDF

Biotech innovators jump on biosimilars bandwagon pp297 - 299
Nuala Moran
doi:10.1038/nbt0412-297a
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Anti-nerve growth factor drugs exonerated p298
Karen Carey
doi:10.1038/nbt0412-298a
Full Text | PDF

Biosimilar fees plug FDA deficit p298
Jeffrey L Fox
doi:10.1038/nbt0412-298b
Full Text | PDF

Corn rot. 1090 p299
doi:10.1038/nbt0412-299
Full Text | PDF

First HEV vaccine approved p300
Allison Proffitt
doi:10.1038/nbt0412-300a
Full Text | PDF

India's GM clamor mounts p300
Killugudi Jayaraman
doi:10.1038/nbt0412-300b
Full Text | PDF

Amgen swallows Micromet to BiTE into ALL market pp300 - 301
Cormac Sheridan
doi:10.1038/nbt0412-300c
Full Text | PDF

Biologics inch toward cholesterol-lowering market pp302 - 304
Ken Garber
doi:10.1038/nbt0412-302
Full Text | PDF

Around the world in a month p303
doi:10.1038/nbt0412-303
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Hemacord approval may foreshadow regulatory creep for HSC therapies p304
Malorye Allison
doi:10.1038/nbt0412-304
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Newsmaker

Tensha Therapeutics p305
Jennifer Rohn
doi:10.1038/nbt0412-305
Tensha is staking a claim on drugging bromodomains as an innovative epigenetic approach to novel anti-cancer agents.
Full Text | PDF

News Features

Positive signals from Washington pp306 - 308
Jeffrey L Fox
doi:10.1038/nbt.2175
US biotech seems reenergized, but unsettled policy questions take a back seat to pending national elections, particularly with the presidency at stake. Jeffrey L Fox reports.
Full Text | PDF

National prescription for drug development pp309 - 312
Meredith Wadman
doi:10.1038/nbt.2176
Vowing to reengineer drug discovery, NIH bets big with a new translational research center. Meredith Wadman reports.
Full Text | PDF

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Bioentrepreneur

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The art of the alliance pp313 - 315
Garry E Menzel and Kleanthis G Xanthopoulos
doi:10.1038/nbt.2150
Full Text | PDF

Correspondence

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Addgene provides an open forum for plasmid sharing pp316 - 317
Melanie Herscovitch, Eric Perkins, Andy Baltus and Melina Fan
doi:10.1038/nbt.2177
Full Text | PDF

Use of genome-wide association studies for drug repositioning pp317 - 320
Philippe Sanseau, Pankaj Agarwal, Michael R Barnes, Tomi Pastinen, J Brent Richards, Lon R Cardon and Vincent Mooser
doi:10.1038/nbt.2151
Full Text | PDF

Bias in high-tier medical journals concerning physician-academic relationships with industry pp320 - 322
Roman Lesko, Samuel Scott and Thomas P Stossel
doi:10.1038/nbt.2179
Full Text | PDF

Features

Top
Patents

Gene patents in Australia: where do we stand? pp323 - 324
David P Simmons and Mark E Wickham
doi:10.1038/nbt.2173
The provision of a patent system that protects innovators and researchers while ensuring reasonable access to emerging technologies and medical treatments are the key objectives of the Australian government's response to three important reports concerning Australia's patent system and gene patents.
Full Text | PDF

Recent patent applications related to drug discovery automation p325
doi:10.1038/nbt.2186
Full Text | PDF

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News and Views

Top

DNA sequencing with nanopores pp326 - 328
Gregory F Schneider and Cees Dekker
doi:10.1038/nbt.2181
Major hurdles in the quest to sequence DNA with biological nanopores have now been overcome.
Full Text | PDF
See also: Research by Cherf et al. | Research by Manrao et al.

Selecting antigens for cancer vaccines pp328 - 329
Francesca Avogadri and Jedd D Wolchok
doi:10.1038/nbt.2174
A cancer vaccine is streamlined by identifying a small set of potent immunogens in a tumor cDNA library.
Full Text | PDF
See also: Research by Pulido et al.

Test driving genome assemblers pp330 - 331
Wei Fan and Ruiqiang Li
doi:10.1038/nbt.2172
Two head-to-head comparisons of genome assembly methods highlight the best performers and outstanding problems.
Full Text | PDF

Omics gets personal p332
Laura DeFrancesco
doi:10.1038/nbt.2184
Full Text | PDF

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Research Highlights

Top

Turning intestines into insulin factories | How sulfa drugs work | Reverse plant breeding success | Starving HIV of genome building blocks | Nanodevices measure bioelectricity


Computational Biology

Top
News Feature

Finding correlations in big data pp334 - 335
doi:10.1038/nbt.2182
A new statistical method called MIC can find diverse types of correlations in large data sets. Nature Biotechnology asked eight experts to weigh in on its utility.
Full Text | PDF

Research

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Article

Using virally expressed melanoma cDNA libraries to identify tumor-associated antigens that cure melanoma pp337 - 343
Jose Pulido, Timothy Kottke, Jill Thompson, Feorillo Galivo, Phonphimon Wongthida, Rosa Maria Diaz, Diana Rommelfanger, Elizabeth Ilett, Larry Pease, Hardev Pandha, Kevin Harrington, Peter Selby, Alan Melcher and Richard Vile
doi:10.1038/nbt.2157
Vaccination with a virus-expressed cDNA library derived from normal prostate cells can cure established prostate cancer in mouse models. Pulido et al. extend this approach and identify specific tumor-associated antigens from tumor-derived virus-expressed cDNA libraries that can be used in combination to cure established melanoma in mice.
Abstract | Full Text | PDF
See also: News and Views by Avogadri & Wolchok

Letters

Automated forward and reverse ratcheting of DNA in a nanopore at 5-A precision pp344 - 348
Gerald M Cherf, Kate R Lieberman, Hytham Rashid, Christopher E Lam, Kevin Karplus and Mark Akeson
doi:10.1038/nbt.2147
A key obstacle to sequencing DNA as it passes through a nanopore is that the translocation rate is too fast to resolve individual bases. Cherf et al. solve this problem with an improved method for ratcheting DNA forward and backward through the nanopore using a DNA polymerase.
First paragraph | Full Text | PDF
See also: News and Views by Schneider & Dekker

Reading DNA at single-nucleotide resolution with a mutant MspA nanopore and phi29 DNA polymerase pp349 - 353
Elizabeth A Manrao, Ian M Derrington, Andrew H Laszlo, Kyle W Langford, Matthew K Hopper, Nathaniel Gillgren, Mikhail Pavlenok, Michael Niederweis and Jens H Gundlach
doi:10.1038/nbt.2171
Protein nanopores are being developed as sensors that could perform rapid, electronic sequencing of long single molecules of DNA. Manrao et al. report the first demonstration of single nucleotide-resolution current traces from a nanopore, and show that these data can be mapped to known DNA sequences.
First paragraph | Full Text | PDF
See also: News and Views by Schneider & Dekker

Design of a dynamic sensor-regulator system for production of chemicals and fuels derived from fatty acids pp354 - 359
Fuzhong Zhang, James M Carothers and Jay D Keasling
doi:10.1038/nbt.2149
Expressing heterologous pathways in cells can create detrimental metabolic imbalances. Zhang et al. increase the yield of a biofuel by engineering regulators in Escherichia coli that sense and adjust pathway expression based on the presence of key intermediate metabolites.
First paragraph | Full Text | PDF

Wheat grain yield on saline soils is improved by an ancestral Na+ transporter gene pp360 - 364
Rana Munns, Richard A James, Bo Xu, Asmini Athman, Simon J Conn, Charlotte Jordans, Caitlin S Byrt, Ray A Hare, Stephen D Tyerman, Mark Tester, Darren Plett and Matthew Gilliham
doi:10.1038/nbt.2120
Salinization of cultivated land and the need to increase agricultural productivity make the development of salt-resistant crops imperative. Field trials show that a durum wheat containing a sodium transporter derived from an ancestral wheat relative produces substantially more grain than a commercial durum wheat lacking this transporter on saline soil.
First paragraph | Full Text | PDF

Errata

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Erratum: Fresh from the pipeline 2011 p365
Jim Kling
doi:10.1038/nbt0412-365a
Full Text | PDF

Erratum: Profiling PARP inhibitors p365
Philip Jones
doi:10.1038/nbt0412-365b
Full Text | PDF

Corrigendum

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Corrigendum: The BioPAX community standard for pathway data sharing p365
Emek Demir, Michael P Cary, Suzanne Paley, Ken Fukuda, Christian Lemer, Imre Vastrik, Guanming Wu, Peter D'Eustachio, Carl Schaefer, Joanne Luciano, Frank Schacherer, Irma Martinez-Flores, Zhenjun Hu, Veronica Jimenez-Jacinto, Geeta Joshi-Tope, Kumaran Kandasamy, Alejandra C Lopez-Fuentes, Huaiyu Mi, Elgar Pichler, Igor Rodchenkov, Andrea Splendiani, Sasha Tkachev, Jeremy Zucker, Gopal Gopinath, Harsha Rajasimha, Ranjani Ramakrishnan, Imran Shah, Mustafa Syed, Nadia Anwar, Ozgun Babur, Michael Blinov, Erik Brauner, Dan Corwin, Sylva Donaldson, Frank Gibbons, Robert Goldberg, Peter Hornbeck, Augustin Luna, Peter Murray-Rust, Eric Neumann, Oliver Reubenacker, Matthias Samwald, Martijn van Iersel, Sarala Wimalaratne, Keith Allen, Burk Braun, Michelle Whirl-Carrillo, Kei-Hoi Cheung, Kam Dahlquist, Andrew Finney, Marc Gillespie, Elizabeth Glass, Li Gong, Robin Haw, Michael Honig, Olivier Hubaut, David Kane, Shiva Krupa, Martina Kutmon, Julie Leonard, Debbie Marks, David Merberg, Victoria Petri, Alex Pico, Dean Ravenscroft, Liya Ren, Nigam Shah, Margot Sunshine, Rebecca Tang, Ryan Whaley, Stan Letovksy, Kenneth H Buetow, Andrey Rzhetsky, Vincent Schachter, Bruno S Sobral, Ugur Dogrusoz, Shannon McWeeney, Mirit Aladjem, Ewan Birney, Julio Collado-Vides, Susumu Goto, Michael Hucka, Nicolas Le Novere, Natalia Maltsev, Akhilesh Pandey, Paul Thomas, Edgar Wingender, Peter D Karp, Chris Sander and Gary D Bader
doi:10.1038/nbt0412-365c
Full Text | PDF

Careers and Recruitment

Top

The rise of the professional master's degree: the answer to the postdoc/PhD bubble pp367 - 368
Maria Theodosiou, Jean-Philippe Rennard and Arsia Amir-Aslani
doi:10.1038/nbt.2180
Professional master's degrees have a proven record of benefitting science-oriented individuals, reorienting their career towards nontraditional fields.
Full Text | PDF

People

People p370
doi:10.1038/nbt.2185
Full Text | PDF

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