Tuesday, March 13, 2012

Nature Communications - 13 March 2012

 
Nature Communications
 
 
Weekly Content Alert
13 March 2012
Featured image:
Featured image
Reimer et al. fabricate single photon nanowire waveguides with quantum dots positioned exactly on their axis.
Latest content:
Articles
Journal homepage
Recommend to library
Web feed
 

Advertisement
Molecular Cytogenetics: Karyotype Evolution, Phylogenomics and Future Prospects

A special issue from Heredity featuring papers that discuss chromosomal diversification at different phylogenetic levels and presents exciting insights to some of the molecular mechanisms that are thought to underpin the structural modification of karyotypes, and much more!

Explore the issue today
 
 Latest ArticlesView all Articles 
 
Sensitivity control through attenuation of signal transfer efficiency by negative regulation of cellular signalling
Yu Toyoshima, Hiroaki Kakuda, Kazuhiro A. Fujita, Shinsuke Uda and Shinya Kuroda
How the sensitivity of biological and pharmacological signalling responses is controlled is poorly understood. Here, computational analyses and cellular experiments show that the sensitivity of a simple biochemical reaction to activators and inhibitors is controlled by negative regulation of cellular signalling.
13 Mar | Nat Commun 3:743 doi:10.1038/ncomms1745 (2012)
Biological sciences  Systems biology
Abstract | Full Text | PDF (1,215 kB) |
Supplementary Information

Integrated photosystem II-based photo-bioelectrochemical cells
Omer Yehezkeli, Ran Tel-Vered, Julian Wasserman, Alexander Trifonov, Dorit Michaeli, Rachel Nechushtai and Itamar Willner
The photosynthetic reaction centres, photosystems I and II, have been investigated for the light-induced generation of fuels and electrical power. Now, Yehezkeli et al. report a photobiofuel cell that generates electricity upon irradiation of photosystem II-functionalized electrodes in aqueous solutions.
13 Mar | Nat Commun 3:742 doi:10.1038/ncomms1741 (2012)
Chemical sciences Catalysis 
Materials science
Abstract | Full Text | PDF (578 kB) |
Supplementary Information

Fast and ultrasensitive method for quantitating prion infectivity titre
Natallia Makarava, Regina Savtchenko, Irina Alexeeva, Robert G. Rohwer and Ilia V. Baskakov
Bioassays are the standard way to measure prion infectivity titres, but can be time-consuming. In this study, bioassays are compared with a modified version of the protein misfolding cyclic amplification technique with beads (PMCAb), demonstrating that PMCAb can be more precise and faster than bioassays.
13 Mar | Nat Commun 3:741 doi:10.1038/ncomms1730 (2012)
Biological sciences Biotechnology 
Cell biology Neuroscience 
Abstract | Full Text | PDF (448 kB)

Multiple exposures to drought 'train' transcriptional responses in Arabidopsis
Yong Ding, Michael Fromm and Zoya Avramova
Whether plants can remember their transcriptional response to stress is unknown. By repeatedly exposing Arabidopsis to drought, we show that the plants remember their transcriptional response to stress and that the altered genes retain the epigenetic mark H3K4me3 and stalled phosphorylated polymerase II.
13 Mar | Nat Commun 3:740 doi:10.1038/ncomms1732 (2012)
Biological sciences Molecular biology Plant sciences
Abstract | Full Text | PDF (565 kB) |
Supplementary Information

Odour concentration-dependent olfactory preference change in C. elegans
Kazushi Yoshida, Takaaki Hirotsu, Takanobu Tagawa, Shigekazu Oda, Tokumitsu Wakabayashi, Yuichi Iino and Takeshi Ishihara
Some animals find the same odorant attractive at high concentrations and repulsive at low concentrations, but how this discrimination occurs is unclear. Using Caenorhabditis elegans as a model system, Yoshida et al. show that different sets of sensory neurons respond to low and high concentrations of odours.
13 Mar | Nat Commun 3:739 doi:10.1038/ncomms1750 (2012)
Biological sciences  Neuroscience
Abstract | Full Text | PDF (8,477 kB) |
Supplementary Information

Intracellular chloride concentration influences the GABAA receptor subunit composition OPEN
Francesca Succol, Hubert Fiumelli, Fabio Benfenati, Laura Cancedda and Andrea Barberis
During development there is a change in the expression of GABAA receptor subunits. Here, Succol and colleagues show that chloride ions mediate the change in α3-α1 and δ-containing GABAA receptors that mediate phasic and tonic inhibition, respectively.
13 Mar | Nat Commun 3:738 doi:10.1038/ncomms1744 (2012)
Biological sciences Biophysics 
Cell biology Neuroscience 
Abstract | Full Text | PDF (1,654 kB)

Bright single-photon sources in bottom-up tailored nanowires OPEN
Michael E. Reimer, Gabriele Bulgarini, Nika Akopian, Moïra Hocevar, Maaike Bouwes Bavinck, Marcel A. Verheijen, Erik P.A.M. Bakkers, Leo P. Kouwenhoven and Val Zwiller
Single-photon sources are important for quantum optical technologies, although achieving efficient light extraction from them with waveguides is limited in top-down approaches. Reimer et al. show a high extraction efficiency using a bottom-up method to grow quantum dots on the axis of nanowire waveguides.
13 Mar | Nat Commun 3:737 doi:10.1038/ncomms1746 (2012)
Physical sciences Applied physics 
Nanotechnology Optical physics
Abstract | Full Text | PDF (1,177 kB)

Infrared light excites cells by changing their electrical capacitance OPEN
Mikhail G. Shapiro, Kazuaki Homma, Sebastian Villarreal, Claus-Peter Richter and Francisco Bezanilla
Pulsed infrared laser light can directly stimulate nerves and muscles, but the underlying biophysical mechanism has remained enigmatic. This study reveals that infrared pulses depolarize target cells by reversibly altering the electrical capacitance of the plasma membrane.
13 Mar | Nat Commun 3:736 doi:10.1038/ncomms1742 (2012)
Biological sciences Biophysics 
Abstract | Full Text | PDF (4,729 kB) |
Supplementary Information

Activation of canonical Wnt signalling is required for TGF-β-mediated fibrosis OPEN
Alfiya Akhmetshina, Katrin Palumbo, Clara Dees, Christina Bergmann, Paulius Venalis, Pawel Zerr, Angelika Horn, Trayana Kireva, Christian Beyer, Jochen Zwerina, Holm Schneider, Anika Sadowski, Marc-Oliver Riener, Ormond A. MacDougald, Oliver Distler, Georg Schett and Jörg H.W. Distler
Aberrant activation of the TGF-β pathway leads to fibrotic disease. Distler and colleagues show that TGF-β-mediated fibrosis requires the decrease of Dickkopf-1, an antagonist of canonical Wnt signalling, suggesting that the two pathways interact for the manifestation of this disease.
13 Mar | Nat Commun 3:735 doi:10.1038/ncomms1734 (2012)
Biological sciences Cell biology 
Medical research 
Abstract | Full Text | PDF (1,458 kB) |
Supplementary Information

Probing charge scattering mechanisms in suspended graphene by varying its dielectric environment
A.K.M. Newaz, Yevgeniy S. Puzyrev, Bin Wang, Sokrates T. Pantelides and Kirill I. Bolotin
A factor limiting the mobility of charge carriers in graphene, and therefore its use in electronic applications, is the Coulomb scattering due to charged impurities. By exposing graphene devices to a range of non-polar liquids, Newaz et al. observe an enhancement of the mobility due to screening.
13 Mar | Nat Commun 3:734 doi:10.1038/ncomms1740 (2012)
Physical sciences Applied physics 
Condensed matter 
Abstract | Full Text | PDF (669 kB) |
Supplementary Information

SUMO modification of the neuroprotective protein TDP1 facilitates chromosomal single-strand break repair OPEN
Jessica J.R. Hudson, Shih-Chieh Chiang, Owen S. Wells, Chris Rookyard and Sherif F. El-Khamisy
Tyrosyl DNA phosphodiesterase 1 (TDP1) repairs DNA breaks and is mutated in the disease Spinocerebellar Ataxia with Axonal Neuropathy. Here TDP1 is shown to be post-translationally modified by sumoylation of lysine 111, and cells carrying a mutation at this residue are inefficient at single-strand DNA break repair.
13 Mar | Nat Commun 3:733 doi:10.1038/ncomms1739 (2012)
Biological sciences Biochemistry 
Molecular biology
Abstract | Full Text | PDF (2,287 kB) |
Supplementary Information

Observation of conducting filament growth in nanoscale resistive memories
Yuchao Yang, Peng Gao, Siddharth Gaba, Ting Chang, Xiaoqing Pan and Wei Lu
Resistive switching devices are promising candidates for non-volatile memories. Using in-situ and ex-situ transmission electron microscopy, Yang et al. present an extensive study of the dynamics of filaments forming across the electrodes of resisting switching devices known as electrochemical metallization memories.
13 Mar | Nat Commun 3:732 doi:10.1038/ncomms1737 (2012)
Physical sciences Applied physics 
Materials science 
Nanotechnology
Abstract | Full Text | PDF (2,654 kB) |
Supplementary Information

Lipid storage disorders block lysosomal trafficking by inhibiting a TRP channel and lysosomal calcium release
Dongbiao Shen, Xiang Wang, Xinran Li, Xiaoli Zhang, Zepeng Yao, Shannon Dibble, Xian-ping Dong, Ting Yu, Andrew P. Lieberman, Hollis D. Showalter and Haoxing Xu
Accumulation of lysosomal lipids is a feature of Niemann'-Picks (NP) disease, but how these lipids contribute to the disease is unclear. In this study, calcium released via the lysosomal TRPML1 channel is shown to be reduced in NP-type C cells, and sphingomyelins are found to inhibit the channel's activity.
13 Mar | Nat Commun 3:731 doi:10.1038/ncomms1735 (2012)
Biological sciences Cell biology 
Chemical biology Neuroscience
Abstract | Full Text | PDF (6,882 kB) |
Supplementary Information
 
Nature Communications
JOBS of the week
Postdoctoral Research Fellowship Vascular Biology
Tulane University School of Medicine
Postdoctoral Research Fellow
University of Michigan
Computational Fluid Dynamics PhD Studentship
Imperial College London
Postdoctoral Fellowship in Cardiovascular Development or Cellular Electrophysiology
Massachusetts General Hospital / Harvard Medical School
Postdoctoral Fellowships
Wellcome Trust
Junior Research Group Leader
University of Cologne
Assistant, Associate and Professor
Wayne State University
Post-Doc Position in Cell and Developmental Biology
Universite de Nice-Valrose
Research Fellow in Healthy Workplaces and Sustainable Environments
Peninsula College of Medicine & Dentistry
Postdoctoral Research Assistant
Queen Mary, University of London Barts and The London School of Medicine and Dentistry
More Science jobs from
Nature Communications
EVENT
6th European Forum for Qualified Person for Pharmacovigilance (QPPV)
24.-26.04.12
London, UK
More science events from
 
 
nature events
Natureevents is a fully searchable, multi-disciplinary database designed to maximise exposure for events organisers. The contents of the Natureevents Directory are now live. The digital version is available here.

Find the latest scientific conferences, courses, meetings and symposia on natureevents.com. For event advertising opportunities across the Nature Publishing Group portfolio please contact natureevents@nature.com
 More Nature Events
You have been sent this Table of Contents Alert because you have opted in to receive it. You can change or discontinue your e-mail alerts at any time, by modifying your preferences on your nature.com account at: www.nature.com/myaccount
(You will need to log in to be recognised as a nature.com registrant)

For further technical assistance, please contact our registration department

For other enquiries, please contact our customer feedback department

Nature Publishing Group | 75 Varick Street, 9th Floor | New York | NY 10013-1917 | USA

Nature Publishing Group's worldwide offices:
London - Paris - Munich - New Delhi - Tokyo - Melbourne
San Diego - San Francisco - Washington - New York - Boston

Macmillan Publishers Limited is a company incorporated in England and Wales under company number 785998 and whose registered office is located at Brunel Road, Houndmills, Basingstoke, Hampshire RG21 6XS.

© 2012 Nature Publishing Group, a division of Macmillan Publishers Limited. All Rights Reserved.
NPG logo
 

No comments: