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| | | | | The case for open computer programs | Darrel Ince and colleagues argue that the policies of most journals and funding bodies towards the release of computer codes as part of the publication process are obsolete. The full release of actual source code should be the norm for any scientific results dependent on computation, they say, with an agreed list of exceptions applicable only rarely. | | | | | | | | | Structural basis of highly conserved ribosome recycling in eukaryotes and archaea | Once a ribosome completes translation of an RNA messenger, it must recycle by dissociating the large and small subunits. Cryoelectron-microscopy reconstructions of the eukaryotic and archaeal ribosomes suggest a remarkable degree of structural and functional conservation over the more than a billion years of evolution that separates eukaryotes and archaea. | | | | | | | | | | | | | | | | | | | | In this week's podcast: the achievements of original computer whizz Alan Turing, the Earth Microbiome Project, and is the Y chromosome really on its way out? | | | | | | | Special: Alan Turing at 100 | | | | The English mathematician Alan Turing was born on 23 June 1912 and died tragically aged only 41. Yet his influence is still felt in many fields. In this issue marking the Turing centenary, Nature hails him as one of the top scientific minds of all time. | | | | | | |
| | | | | | | | | | | | | | | | | | | | Turing at 100 ▶ | | | This year marks the centenary of the birth of Alan Turing. He deserves your attention. | | | | | | | | Over the line ▶ | | | Dishonesty, however tempting, is the wrong way to tackle climate sceptics. | | | | | | | | | | | The man behind the machine ▶ | | | Alan Turing is famous for many reasons. Andrew Hodges delves into why Turing's achievements took so long to be recognized. | | | | | | | | | | | Seven days: 17–23 February 2012 ▶ | | | The week in science: Animals saved from chemical safety tests; fund launched to clean up methane and black-carbon emissions; and excitement over nanopore DNA sequencing. | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Q&A: The eternal optimist ▶ | | | Peter Diamandis is the founder of the non-profit X Prize Foundation, which aims to kick-start research and development to solve humanity's biggest challenges. On the publication this week of his book Abundance, co-authored with journalist Steven Kotler, he explains how technological and social progress will enable us to provide enough food, water and energy for all. | | | | | | | | | | | | | | | | | | | | |
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| | | | | | | | | | | | | | | | | | | Gain control by layer six in cortical circuits of vision ▶ | | | Shawn R. Olsen, Dante S. Bortone, Hillel Adesnik & Massimo Scanziani | | | Layer six in the mouse primary visual cortex is a major mediator of cortical gain modulation and may be a node through which convergent inputs from several brain areas can regulate the earliest steps of cortical visual processing. | | | | | | | | | | | The sirtuin SIRT6 regulates lifespan in male mice ▶ | | | Yariv Kanfi, Shoshana Naiman, Gail Amir, Victoria Peshti, Guy Zinman et al. | | | The role of sirtuins in longevity is controversial, and little is known about mammalian sirtuins; now, male mice that overexpress SIRT6 are shown to have a longer lifespan than wild-type mice, unlike their female counterparts. | | | | | | | | Strict evolutionary conservation followed rapid gene loss on human and rhesus Y chromosomes ▶ | | | Jennifer F. Hughes, Helen Skaletsky, Laura G. Brown, Tatyana Pyntikova, Tina Graves et al. | | | The male-specific region of rhesus macaque and human Y chromosome (MSY) are sequenced and compared to the human MSY, showing that during the last 25 million years MSY gene loss in the rhesus and human lineages was limited to the youngest stratum (stratum 5), whereas gene loss in the older strata ceased more than 25 million years ago. | | | | | | | | Circadian rhythms govern cardiac repolarization and arrhythmogenesis ▶ | | | Darwin Jeyaraj, Saptarsi M. Haldar, Xiaoping Wan, Mark D. McCauley, Jürgen A. Ripperger et al. | | | Circadian rhythmicity of cardiac ion-channel expression and of an index of myocardial repolarization is under the control of Klf15, a clock-dependent oscillator that is required for generating transient outward potassium current, and deficiencies or excesses of which cause loss of rhythmic variation in myocardial and abnormal repolarization, and an enhanced susceptibility to ventricular arrhythmias. | | | | | | | | | | | The mechanism of OTUB1-mediated inhibition of ubiquitination ▶ | | | Reuven Wiener, Xiangbin Zhang, Tao Wang & Cynthia Wolberger | | | OTUB1 is an atypical deubiquitinating enzyme which prevents ubiquitin attachment and is important in the DNA damage pathway; structural analysis of OTUB1 in complex with an E2 ubiquitin-conjugating enzyme reveals that the ability of OTUB1 to inhibit ubiquitin chain synthesis is regulated by an allosteric feedback mechanism. | | | | | | | | | | | | | | Dysfunction of lipid sensor GPR120 leads to obesity in both mouse and human ▶ | | | Atsuhiko Ichimura, Akira Hirasawa, Odile Poulain-Godefroy, Amélie Bonnefond, Takafumi Hara et al. | | | Mice deficient in the lipid sensor GPR120 develop obesity, glucose intolerance and fatty liver when fed a high-fat diet, and a loss-of-function variant in the GPR120 gene strongly contributes to increased obesity in human. | | | | | | | | | | | Stability criteria for complex ecosystems ▶ | | | Stefano Allesina & Si Tang | | | Analysis of stability criteria for different types of complex ecological network shows key differences between predator–prey interactions, which are stabilizing, and competitive and mutualistic interactions, which are destabilizing. | | | | | | | | | | | | | | Ubiquitin-dependent regulation of COPII coat size and function ▶ | | | Lingyan Jin, Kanika Bajaj Pahuja, Katherine E. Wickliffe, Amita Gorur, Christine Baumgärtel et al. | | | The size of COPII vesicles is shown to be controlled by monoubiquitylation, with potential implications for cranio-lenticulo-sutural dysplasia and chylomicron retention disease. | | | | | | | | | | | | | | Maintenance of muscle stem-cell quiescence by microRNA-489 ▶ | | | Tom H. Cheung, Navaline L. Quach, Gregory W. Charville, Ling Liu, Lidia Park et al. | | | Adult muscle stem cells are used as a model system to show that the microRNA pathway, and specifically miR-489, is essential for the maintenance of the quiescent state of an adult stem-cell population by suppressing a key proliferation factor, Dek. | | | | | | | | Clonal selection drives genetic divergence of metastatic medulloblastoma ▶ | | | Xiaochong Wu, Paul A. Northcott, Adrian Dubuc, Adam J. Dupuy, David J. H. Shih et al. | | | In a mouse model and in human medulloblastoma patients, the metastases in an individual have similar genomic alterations and DNA methylation patterns, but these patterns are highly divergent from those of the primary tumour, indicating that therapies will need to be tailored to fit the molecular alterations present in the primary tumour and/or the metastases. | | | | | | | | DCC constrains tumour progression via its dependence receptor activity ▶ | | | Marie Castets, Laura Broutier, Yann Molin, Marie Brevet, Guillaume Chazot et al. | | | A mouse model is developed in which the pro-apoptotic activity of DCC is silenced and the mice are more prone to intestinal tumour progression, giving insight into the role of DCC in human colorectal cancer. | | | | | | | | Deleted in colorectal carcinoma suppresses metastasis in p53-deficient mammary tumours ▶ | | | Paul Krimpenfort, Ji-Ying Song, Natalie Proost, John Zevenhoven, Jos Jonkers et al. | | | In a mouse model of mammary carcinoma, loss of deleted in colorectal cancer (DCC) promotes metastasis formation, and in cell cultures derived from p53-deficient mouse mammary tumours DCC expression controls netrin-1-dependent cell survival, supporting the function of DCC as a context-dependent tumour suppressor that limits survival of disseminated tumour cells. | | | | | | | | | | | | | | Structure and dynamics of the M3 muscarinic acetylcholine receptor ▶ | | | Andrew C. Kruse, Jianxin Hu, Albert C. Pan, Daniel H. Arlow, Daniel M. Rosenbaum et al. | | | The X-ray crystal structure of the M3 muscarinic acetylcholine receptor bound to the bronchodilator drug tiotropium is reported; comparison of this structure with that of the M2 muscarinic acetylcholine receptor reveals key differences that could potentially be exploited to develop subtype-selective drugs. | | | | | | | | | | | | | | | | | | | | | | | | | | Brief Communications Arising | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| | | | | | | Nature Insight Regulatory RNA In-depth sequencing studies have revealed an unexpected complexity to the nature and function of RNAs encoded by DNA. This Insight includes an explanation of how dynamic reorganization of RNA structure directs many cellular processes, discusses systems controlled by specific RNAs and offers a modular model for the function of long non-coding RNAs. Access the Insight online. | | | | | | | | |
| | | | | | | | | | | | | | | | The mechanism of OTUB1-mediated inhibition of ubiquitination ▶ | | | Reuven Wiener, Xiangbin Zhang, Tao Wang & Cynthia Wolberger | | | OTUB1 is an atypical deubiquitinating enzyme which prevents ubiquitin attachment and is important in the DNA damage pathway; structural analysis of OTUB1 in complex with an E2 ubiquitin-conjugating enzyme reveals that the ability of OTUB1 to inhibit ubiquitin chain synthesis is regulated by an allosteric feedback mechanism. | | | | | | | | | | | Ubiquitin-dependent regulation of COPII coat size and function ▶ | | | Lingyan Jin, Kanika Bajaj Pahuja, Katherine E. Wickliffe, Amita Gorur, Christine Baumgärtel et al. | | | The size of COPII vesicles is shown to be controlled by monoubiquitylation, with potential implications for cranio-lenticulo-sutural dysplasia and chylomicron retention disease. | | | | | | | | | | | | | | | | | Structure and dynamics of the M3 muscarinic acetylcholine receptor ▶ | | | Andrew C. Kruse, Jianxin Hu, Albert C. Pan, Daniel H. Arlow, Daniel M. Rosenbaum et al. | | | The X-ray crystal structure of the M3 muscarinic acetylcholine receptor bound to the bronchodilator drug tiotropium is reported; comparison of this structure with that of the M2 muscarinic acetylcholine receptor reveals key differences that could potentially be exploited to develop subtype-selective drugs. | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Wetting of flexible fibre arrays ▶ | | | C. Duprat, S. Protière, A. Y. Beebe & H. A. Stone | | | The parameters critical in determining the behaviour of a fibrous medium wetted with a single liquid drop are identified as fibre flexibility, fibre geometry and drop volume. | | | | | | | | | | | | | | The case for open computer programs ▶ | | | Darrel C. Ince, Leslie Hatton & John Graham-Cumming | | | Scientific reproducibility now very often depends on the computational method being available to duplicate, so here it is argued that all source code should be freely available. | | | | | | | | | | | | | | | | | | | | | | | | | | Brief Communications Arising | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Brief Communications Arising | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
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| | | | | | | | | Education: Outside the box ▶ | | | A European industrial doctorate could help students to break out of academia, but applied science is not for everyone. | | | | | | | | | | | | | | | | | Careers related news & comment | | | | | | | | | | | | |
| | | naturejobs.com Science jobs of the week | | | | | | | | | | | | | | | No matter what your career stage, student, postdoc or senior scientist, you will find articles on naturejobs.com to help guide you in your science career. Keep up-to-date with the latest sector trends, vote in our reader poll and sign-up to receive the monthly Naturejobs newsletter. | | | | | | | • Nature events featured events | | | | | | natureevents featured events | | | | | | | Nature events is the premier resource for scientists looking for the latest scientific conferences, courses, meetings and symposia. Featured across Nature Publishing Group journals and centrally at natureevents.com it is an essential reference guide to scientific events worldwide. | | | | |
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