The ISME Journal - Table of Contents alert Volume 6 Issue 3

TABLE OF CONTENTS Volume 6, Issue 3 (March 2012) In this issue Original Articles Short Communication Corrigendum Also new AOP Sign up for e-alerts Recommend to your library Web feed Subscribe Advertisement Subscribe to The ISME Journal Gain access to the latest research within microbial ecology.Subscribe today   Original Articles Top MICROBIAL POPULATION AND COMMUNITY ECOLOGY Phytoplankton distribution patterns in the northwestern Sargasso Sea revealed by small subunit rRNA genes from plastids Alexander H Treusch, Elif Demir-Hilton, Kevin L Vergin, Alexandra Z Worden, Craig A Carlson, Michael G Donatz, Robert M Burton and Stephen J Giovannoni ISME J 2012 6: 481-492; advance online publication, September 29, 2011; 10.1038/ismej.2011.117 Abstract | Full Text Quorum quenching quandary: resistance to antivirulence compounds Toshinari Maeda, Rodolfo García-Contreras, Mingming Pu, Lili Sheng, Luis Rene Garcia, Maria Tomás and Thomas K Wood ISME J 2012 6: 493-501; advance online publication, September 15, 2011; 10.1038/ismej.2011.122 Abstract | Full Text Shifts in bacterial communities of two caribbean reef-building coral species affected by white plague disease Anny Cárdenas, Luis M Rodriguez-R, Valeria Pizarro, Luis F Cadavid and Catalina Arévalo-Ferro ISME J 2012 6: 502-512; advance online publication, September 29, 2011; 10.1038/ismej.2011.123 Abstract | Full Text Seasonal Synechococcus and Thaumarchaeal population dynamics examined with high resolution with remote in situ instrumentation Julie C Robidart, Christina M Preston, Ryan W Paerl, Kendra A Turk, Annika C Mosier, Christopher A Francis, Christopher A Scholin and Jonathan P Zehr ISME J 2012 6: 513-523; advance online publication, October 6, 2011; 10.1038/ismej.2011.127 Abstract | Full Text Mg2+ as an indicator of nutritional status in marine bacteria Mikal Heldal, Svein Norland, Egil Severin Erichsen, Ruth-Anne Sandaa, Aud Larsen, Frede Thingstad and Gunnar Bratbak ISME J 2012 6: 524-530; advance online publication, September 22, 2011; 10.1038/ismej.2011.130 Abstract | Full Text Comparative analyses of foregut and hindgut bacterial communities in hoatzins and cows Filipa Godoy-Vitorino, Katherine C Goldfarb, Ulas Karaoz, Sara Leal, Maria A Garcia-Amado, Philip Hugenholtz, Susannah G Tringe, Eoin L Brodie and Maria Gloria Dominguez-Bello ISME J 2012 6: 531-541; advance online publication, September 22, 2011; 10.1038/ismej.2011.131 Abstract | Full Text Diversity and dynamics of rare and of resident bacterial populations in coastal sands Angélique Gobet, Simone I Böer, Susan M Huse, Justus E E van Beusekom, Christopher Quince, Mitchell L Sogin, Antje Boetius and Alban Ramette ISME J 2012 6: 542-553; advance online publication, October 6, 2011; 10.1038/ismej.2011.132 Abstract | Full Text Spatial variability overwhelms seasonal patterns in bacterioplankton communities across a river to ocean gradient Caroline S Fortunato, Lydie Herfort, Peter Zuber, Antonio M Baptista and Byron C Crump ISME J 2012 6: 554-563; advance online publication, October 20, 2011; 10.1038/ismej.2011.135 Abstract | Full Text MICROBE-MICROBE AND MICROBE-HOST INTERACTIONS Assessing the complex sponge microbiota: core, variable and species-specific bacterial communities in marine sponges Susanne Schmitt, Peter Tsai, James Bell, Jane Fromont, Micha Ilan, Niels Lindquist, Thierry Perez, Allen Rodrigo, Peter J Schupp, Jean Vacelet, Nicole Webster, Ute Hentschel and Michael W Taylor ISME J 2012 6: 564-576; advance online publication, October 13, 2011; 10.1038/ismej.2011.116 Abstract | Full Text Reductive genome evolution, host–symbiont co-speciation and uterine transmission of endosymbiotic bacteria in bat flies Takahiro Hosokawa, Naruo Nikoh, Ryuichi Koga, Masahiko Satô, Masahiko Tanahashi, Xian-Ying Meng and Takema Fukatsu ISME J 2012 6: 577-587; advance online publication, September 22, 2011; 10.1038/ismej.2011.125 Abstract | Full Text Co-habiting amphibian species harbor unique skin bacterial communities in wild populations Valerie J McKenzie, Robert M Bowers, Noah Fierer, Rob Knight and Christian L Lauber ISME J 2012 6: 588-596; advance online publication, September 29, 2011; 10.1038/ismej.2011.129 Abstract | Full Text Acquisition of epibiotic bacteria along the life cycle of the hydrothermal shrimp Rimicaris exoculata Mathieu Guri, Lucile Durand, Valérie Cueff-Gauchard, Magali Zbinden, Philippe Crassous, Bruce Shillito and Marie-Anne Cambon-Bonavita ISME J 2012 6: 597-609; advance online publication, October 13, 2011; 10.1038/ismej.2011.133 Abstract | Full Text EVOLUTIONARY GENETICS An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea Daniel McDonald, Morgan N Price, Julia Goodrich, Eric P Nawrocki, Todd Z DeSantis, Alexander Probst, Gary L Andersen, Rob Knight and Philip Hugenholtz ISME J 2012 6: 610-618; advance online publication, December 1, 2011; 10.1038/ismej.2011.139 Abstract | Full Text INTEGRATED GENOMICS AND POST-GENOMICS APPROACHES IN MICROBIAL ECOLOGY Cyanophage tRNAs may have a role in cross-infectivity of oceanic Prochlorococcus and Synechococcus hosts Hagay Enav, Oded Béjà and Yael Mandel-Gutfreund ISME J 2012 6: 619-628; advance online publication, October 20, 2011; 10.1038/ismej.2011.146 Abstract | Full Text GEOMICROBIOLOGY AND MICROBIAL CONTRIBUTIONS TO GEOCHEMICAL CYCLES Decoupling of ammonium regulation and ntcA transcription in the diazotrophic marine cyanobacterium Trichodesmium sp. IMS101 Anton F Post, Branko Rihtman and Qingfeng Wang ISME J 2012 6: 629-637; advance online publication, September 22, 2011; 10.1038/ismej.2011.121 Abstract | Full Text MICROBIAL ECOLOGY AND FUNCTIONAL DIVERSITY OF NATURAL HABITATS Black reefs: iron-induced phase shifts on coral reefs Linda Wegley Kelly, Katie L Barott, Elizabeth Dinsdale, Alan M Friedlander, Bahador Nosrat, David Obura, Enric Sala, Stuart A Sandin, Jennifer E Smith, Mark J A Vermeij, Gareth J Williams, Dana Willner and Forest Rohwer ISME J 2012 6: 638-649; advance online publication, September 1, 2011; 10.1038/ismej.2011.114 Abstract | Full Text Sunlight modulates the relative importance of heterotrophic bacteria and picophytoplankton in DMSP-sulphur uptake Clara Ruiz-González, Rafel Simó, Maria Vila-Costa, Ruben Sommaruga and Josep M Gasol ISME J 2012 6: 650-659; advance online publication, September 29, 2011; 10.1038/ismej.2011.118 Abstract | Full Text Degradation of cyanobacterial biomass in anoxic tidal-flat sediments: a microcosm study of metabolic processes and community changes Jutta Graue, Bert Engelen and Heribert Cypionka ISME J 2012 6: 660-669; advance online publication, September 15, 2011; 10.1038/ismej.2011.120 Abstract | Full Text Massive multiplication of genome and ribosomes in dormant cells (akinetes) of Aphanizomenon ovalisporum (Cyanobacteria) Assaf Sukenik, Ruth N Kaplan-Levy, Jessica Mark Welch and Anton F Post ISME J 2012 6: 670-679; advance online publication, October 6, 2011; 10.1038/ismej.2011.128 Abstract | Full Text Disconnect of microbial structure and function: enzyme activities and bacterial communities in nascent stream corridors Aline Frossard, Linda Gerull, Michael Mutz and Mark O Gessner ISME J 2012 6: 680-691; advance online publication, October 27, 2011; 10.1038/ismej.2011.134 Abstract | Full Text MICROBIAL ECOSYSTEM IMPACTS Shifts in soil microorganisms in response to warming are consistent across a range of Antarctic environments Etienne Yergeau, Stef Bokhorst, Sanghoon Kang, Jizhong Zhou, Charles W Greer, Rien Aerts and George A Kowalchuk ISME J 2012 6: 692-702; advance online publication, September 22, 2011; 10.1038/ismej.2011.124 Abstract | Full Text Short Communication Top INTEGRATED GENOMICS AND POST-GENOMICS APPROACHES IN MICROBIAL ECOLOGY Unveiling in situ interactions between marine protists and bacteria through single cell sequencing Manuel Martinez-Garcia, David Brazel, Nicole J Poulton, Brandon K Swan, Monica Lluesma Gomez, Dashiell Masland, Michael E Sieracki and Ramunas Stepanauskas ISME J 2012 6: 703-707; advance online publication, September 22, 2011; 10.1038/ismej.2011.126 Abstract | Full Text Corrigendum Top Black reefs: iron-induced phase shifts on coral reefs Linda Wegley Kelly, Katie L Barott, Elizabeth Dinsdale, Alan M Friedlander, Bahador Nosrat, David Obura, Enric Sala, Stuart A Sandin, Jennifer E Smith, Mark JA Vermeij, Gareth J Williams, Dana Willner and Forest Rohwer ISME J 2012 6: 708; 10.1038/ismej.2011.148 Full Text Advertisement If you are unable to access the articles in this Table of Contents e-alert, your library may not subscribe to this journal. Library recommendation through our online recommendation form is a simple way to make your librarian aware that The ISME Journal is valuable to your research. Recommend now.   Natureevents is a fully searchable, multi-disciplinary database designed to maximise exposure for events organisers. The contents of the Natureevents Directory are now live. The digital version is available here. Find the latest scientific conferences, courses, meetings and symposia on natureevents.com. For event advertising opportunities across the Nature Publishing Group portfolio please contact natureevents@nature.com More Nature Events Please note that you need to be a subscriber or site-licence holder to enjoy full-text access to The ISME Journal. In order to do so, please purchase a subscription. You have been sent this Table of Contents Alert because you have opted in to receive it. You can change or discontinue your e-mail alerts at any time, by modifying your preferences on your nature.com account at: www.nature.com/nams/svc/myaccount (You will need to log in to be recognised as a nature.com registrant). For further technical assistance, please contact our registration department. For print subscription enquiries, please contact our subscription department. For other enquiries, please contact our customer feedback department. Nature Publishing Group | 75 Varick Street, 9th Floor | New York | NY 10013-1917 | USA Nature Publishing Group's worldwide offices: London - Paris - Munich - New Delhi - Tokyo - Melbourne San Diego - San Francisco - Washington - New York - Boston Macmillan Publishers Limited is a company incorporated in England and Wales under company number 785998 and whose registered office is located at Brunel Road, Houndmills, Basingstoke, Hampshire RG21 6XS. © 2012 Nature Publishing Group, a division of Macmillan Publishers Limited. All Rights Reserved.