Wednesday, January 4, 2012

Nature contents: 05 January 2011

 
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  Volume 481 Number 7379   
 

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 News & Comment    Biological Sciences    Chemical Sciences
 
 Physical Sciences    Earth & Environmental Sciences    Careers & Jobs
 
 
 

This week's highlights

 
 

Biological Sciences

More Biological sciences
 
A sensing array of radically coupled genetic 'biopixels'
 

Synchronized populations of Escherichia coli bacteria distributed in quorum-sensing colonies - or biopixels - have been used to build an LCD-like macroscopic clock capable of sensing the presence of arsenic via modulation of the oscillatory period. Biopixel colonies of this type could form the basis of genetic biosensors capable of detecting heavy metals and pathogens.

 
 
 

Physical Sciences

More Physical sciences
 
A gas cloud on its way towards the supermassive black hole at the Galactic Centre
 

A giant gas cloud has been identified in the constellation of Sagittarius, moving towards the radio source Sgr A*, the site of the supermassive black hole at the centre of the Milky Way. Models predict that as the cloud approaches, X-ray emissions will become much brighter, and a giant radiation flare may be emitted in a few years as the cloud breaks up and feeds gas into the black.

 
 
 

Physical Sciences

More Physical sciences
 
Demonstration of temporal cloaking
 

The 'time cloak' is a system that, in theory, artificially creates a hole in time by accelerating and slowing down, respectively, the front and rear parts of a probe light beam. Fridman et al. demonstrate such a time cloak in a fibre-based system where an event that causes a clear disturbance to a probe beam appears not to occur at all when the time cloak is switched on.

 
 
 
 
 
 
 
 
 

Cell Research Editor's Choice 2011

Cell Research is proud to present the Editor's Choice 2011 - a collection of featured articles from 2011 that represent a broad scope in basic molecular and cell biology research.
Take advantage of free access to select articles from the Editor's Choice today!

 
 
 
 
 
 
 
 

Podcast & Video

 
 

In this week's podcast: the five hardest experiments and a look forward to science in 2012.

 
 
 
 
News & Comment Read daily news coverage top
 
 
 
 
 
 

THIS WEEK

 
 
 
 
 

Editorial

 
     
 
 
 
 
 

Reach out about climate ▶

 
 

Where political leadership on climate change is lacking, scientists must be prepared to stick their heads above the parapet.

 
 
 
 
 
 

World View

 
     
 
 
 
 
 

Blue-sky bias should be brought down to Earth ▶

 
 

High-prestige research hogs the money, while the needs — and value — of the US science agencies closest to the public are ignored, says Daniel Sarewitz.

 
 
 
 
 
 

Seven Days

 
     
 
 
 
 
 

Seven days: 5 January 2012 ▶

 
 

The week in science: researcher arrested for supplying stem-cell clinic; XMRV studies retracted; and a professor faces criminal charges for lab death.

 
 
 
 
 

NEWS IN FOCUS

 
 
 
 
 

Call to censor flu studies draws fire ▶

 
 

Critics say controversy over publication of mutant-H5N1 research highlights biosecurity weaknesses.

 
 
 
 
 
 

Survey tunes in to dark energy ▶

 
 

Sonic yardstick offers a measure of Universe's expansion.

 
 
 
 
 
 

New year, new science ▶

 
 

Nature looks ahead to the key findings and events that may emerge in 2012.

 
 
 
 
 
 

Q&A: A passion for science without barriers ▶

 
 

Nancy Hopkins, renowned champion of gender equality, looks back over her career.

 
 
 
 
 
 

Features

 
     
 
 
 
 
 

Frontier experiments: Tough science ▶

 
 

Five experiments as hard as finding the Higgs.

 
 
 
 
 
 

Kepler's surprise: The sounds of the stars ▶

 
 

Data from NASA's Kepler space telescope have revolutionized the search for planets outside the Solar System — and are now doing the same for asteroseismology.

 
 
 
 
 

COMMENT

 
 
 
 
 

Science publishing: How to stop plagiarism ▶

 
 

Duplication is easily detected by software, yet it remains a problem. Ten experts explain how to stamp it out.

 
 
 
 
 
 

Higgs boson: The need for new physics ▶

 
 

Regardless of whether the Higgs detection is confirmed, the standard model is incomplete, says John Ellis.

 
 
 
 
 
 

Sociology of science: Keep standards high ▶

 
 

As models of authorship and collaboration change in the digital age, we must rely on trust to filter the products of research, says Jerome Ravetz.

 
 
 
 
 
 

Books and Arts

 
     
 
 
 
 
 

Robotics: Morals and machines ▶

 
 

A view of robotics reveals ethics has not kept up with technology, finds Braden Allenby.

 
 
 
 
 
 

Books in brief ▶

 
 
 
 
 
 

Q&A: The science showman ▶

 
 

Chemist and educator Bassam Shakhashiri is known for his dramatic live demonstrations of chemistry in action. As he takes the helm as president of the American Chemical Society (ACS) this week, he talks about the state of science education and how to engage people in chemistry through the wonders of the lab.

 
 
 
 
 
 

Correspondence

 
     
 
 
 
 
 

Sustainable development: Call to veto Brazil's forest-code revisions Alison G. Nazareno | National parks: Mauritius is putting conservation at risk F. B. Vincent Florens | Curiosity imaging: Phoenix first to see silt grains on Mars Michael Velbel | Shaping policy: Science and politics need more empathy Len Fisher

 
 
 
 
 

Correction

 
     
 
 
 
 
 

Corrections ▶

 
 
 
 
 
 
 
 
 
 
   
 
 

Royal Society medals and awards 2012 - Call for nominations
The Royal Society's medals, awards and prize lectureships provide an opportunity to celebrate excellence in science. We invite you to nominate scientists who have made outstanding achievements. The deadline for nominations is Monday 6 February 2012. For more information please visit royalsociety.org/awards

 
 
 
 
 
 
 
Biological Sciences top
 
 
 
 
 
 

RESEARCH

 
 
 
 
 

Latest Online

 
     
 
 
 
 
 

Biomechanics: Leaping lizards and dinosaurs ▶

 
 

R. McNeill Alexander

 
 
 
 
 
 

Tail-assisted pitch control in lizards, robots and dinosaurs ▶

 
 

Thomas Libby, Talia Y. Moore, Evan Chang-Siu, Deborah Li, Daniel J. Cohen et al.

 
 

Comparison of real lizards with a robotic version and a dinosaur model shows that lizards use their tails to control body pitch in aerial motion by means of transfer of angular momentum from the body to the tail.

 
 
 
 
 
 

Differential oestrogen receptor binding is associated with clinical outcome in breast cancer ▶

 
 

Caryn S. Ross-Innes, Rory Stark, Andrew E. Teschendorff, Kelly A. Holmes, H. Raza Ali et al.

 
 

Genome-wide mapping of oestrogen receptor-α binding sites in primary breast cancer tissues shows that oestrogen receptor binding is dynamically regulated and that the expression of genes near differentially bound regulatory regions is associated with clinical outcome.

 
 
 
 
 
 

Vaccine protection against acquisition of neutralization-resistant SIV challenges in rhesus monkeys ▶

 
 

Dan H. Barouch, Jinyan Liu, Hualin Li, Lori F. Maxfield, Peter Abbink et al.

 
 

Protective efficacy of novel vaccine candidates in rhesus monkeys opens new paths for the development of an HIV-1 vaccine.

 
 
 
 
 
 

FBXO11 targets BCL6 for degradation and is inactivated in diffuse large B-cell lymphomas ▶

 
 

Shanshan Duan, Lukas Cermak, Julia K. Pagan, Mario Rossi, Cinzia Martinengo et al.

 
 

FBXO11 is identified as the F-box protein that normally targets BCL6 for degradation, and FBXO11 deletions or mutations that prevent this function and thus stabilize BCL6 are found in B-cell lymphomas.

 
 
 
 
 
 

Articles and Letters

 
     
 
 
 
 
 

A sensing array of radically coupled genetic ‘biopixels’ ▶

 
 

Arthur Prindle, Phillip Samayoa, Ivan Razinkov, Tal Danino, Lev S. Tsimring et al.

 
 

Thousands of quorum-sensing Escherichia coli colonies are synchronized over centimetres using redox signalling to create ‘biopixels’ that can sense trace amounts of arsenic in water.

 
 
 
 
 
 

Antiparallel EmrE exports drugs by exchanging between asymmetric structures ▶

 
 

Emma A. Morrison, Gregory T. DeKoster, Supratik Dutta, Reza Vafabakhsh, Michael W. Clarkson et al.

 
 

NMR and single molecule FRET experiments show that antiparallel EmrE dimers interconvert between two identical but oppositely oriented conformations that are each open only to one side of the membrane.

 
 
 
 
 
 

Reversal of cocaine-evoked synaptic potentiation resets drug-induced adaptive behaviour ▶

 
 

Vincent Pascoli, Marc Turiault & Christian Lüscher

 
 

In mice, cocaine is found to potentiate excitatory transmission in medium-sized spiny neurons expressing the type-1 dopamine receptor; depotentiation reversed cocaine-induced locomotor sensitization, raising the possibility of novel treatments for addiction.

 
 
 
 
 
 

Modulation of TRPA1 thermal sensitivity enables sensory discrimination in Drosophila ▶

 
 

Kyeongjin Kang, Vincent C. Panzano, Elaine C. Chang, Lina Ni, Alexandra M. Dainis et al.

 
 

Many TRP ion channels respond to more than one category of cue, and how they discriminate between them is largely unknown; the mechanism by which TRPA1 discriminates between sensory stimuli in Drosophila is now determined.

 
 
 
 
 
 

Antibody-based protection against HIV infection by vectored immunoprophylaxis ▶

 
 

Alejandro B. Balazs, Joyce Chen, Christin M. Hong, Dinesh S. Rao, Lili Yang et al.

 
 

A single injection of a viral vector that encodes antibodies able to neutralize most HIV strains protects humanized mice from HIV infection.

 
 
 
 
 
 

Interactions between cancer stem cells and their niche govern metastatic colonization ▶

 
 

Ilaria Malanchi, Albert Santamaria-Martínez, Evelyn Susanto, Hong Peng, Hans-Anton Lehr et al.

 
 

For the initiation of metastasis, there must be a small population of cancer stem cells at the secondary site and, to maintain this population and allow proliferation, infiltrating cancer cells must induce the expression of stromal periostin.

 
 
 
 
 
 

Open structure of the Ca2+ gating ring in the high-conductance Ca2+-activated K+ channel ▶

 
 

Peng Yuan, Manuel D. Leonetti, Yichun Hsiung & Roderick MacKinnon

 
 

The crystal structure of the calcium-bound gating ring of a calcium- and voltage-activated potassium channel shows in detail how the effect of calcium binding on the gating ring produces the conformational change from closed to open.

 
 
 
 
 
 

Structure of a methyl-coenzyme M reductase from Black Sea mats that oxidize methane anaerobically ▶

 
 

Seigo Shima, Martin Krueger, Tobias Weinert, Ulrike Demmer, Jörg Kahnt et al.

 
 

The crystal structure of the enzyme MCR from methanogenic archaea shows that it is very similar to that of methanotrophic archaea; the differences observed may tune the enzymes for their respective biological context within the sea mats.

 
 
 
 
 
 

News & Views

 
     
 
 
 
 
 

Synthetic biology: Bacteria collaborate to sense arsenic ▶

 
 

Christopher A. Voigt

 
 
 
 
 
 

Neuroscience: Behavioural effects of cocaine reversed ▶

 
 

Marina E. Wolf

 
 
 
 
 
 

Biomechanics: Leaping lizards and dinosaurs ▶

 
 

R. McNeill Alexander

 
 
 
 
 

NEWS & COMMENT

 
 
 
 
 

Call to censor flu studies draws fire | New year, new science | Books in brief

 
 
 
 
 

CAREERS

 
 
 
 
 

Turning point: Tiago Branco

 
 
 
 
 
 

More Biological Sciences ▶

 
 
 
 
 
 
 
 
 
 
   
 
 

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Download today.

 
 
 
 
 
 
 
Chemical Sciences top
 
 
 
 
 
 

RESEARCH

 
 
 
 
 

Articles and Letters

 
     
 
 
 
 
 

Antiparallel EmrE exports drugs by exchanging between asymmetric structures ▶

 
 

Emma A. Morrison, Gregory T. DeKoster, Supratik Dutta, Reza Vafabakhsh, Michael W. Clarkson et al.

 
 

NMR and single molecule FRET experiments show that antiparallel EmrE dimers interconvert between two identical but oppositely oriented conformations that are each open only to one side of the membrane.

 
 
 
 
 
 

Open structure of the Ca2+ gating ring in the high-conductance Ca2+-activated K+ channel ▶

 
 

Peng Yuan, Manuel D. Leonetti, Yichun Hsiung & Roderick MacKinnon

 
 

The crystal structure of the calcium-bound gating ring of a calcium- and voltage-activated potassium channel shows in detail how the effect of calcium binding on the gating ring produces the conformational change from closed to open.

 
 
 
 
 

NEWS & COMMENT

 
 
 
 
 

Q&A: The science showman

 
 
 
 
 
 

More Chemical Sciences ▶

 
 
 
 
 
 
 
Physical Sciences top
 
 
 
 
 
 

RESEARCH

 
 
 
 
 

Latest Online

 
     
 
 
 
 
 

Materials science: A fresh twist for self-assembly ▶

 
 

Volker Schaller & Andreas R. Bausch

 
 
 
 
 
 

Biomechanics: Leaping lizards and dinosaurs ▶

 
 

R. McNeill Alexander

 
 
 
 
 
 

Tail-assisted pitch control in lizards, robots and dinosaurs ▶

 
 

Thomas Libby, Talia Y. Moore, Evan Chang-Siu, Deborah Li, Daniel J. Cohen et al.

 
 

Comparison of real lizards with a robotic version and a dinosaur model shows that lizards use their tails to control body pitch in aerial motion by means of transfer of angular momentum from the body to the tail.

 
 
 
 
 
 

Reconfigurable self-assembly through chiral control of interfacial tension ▶

 
 

Thomas Gibaud, Edward Barry, Mark J. Zakhary, Mir Henglin, Andrew Ward et al.

 
 

Molecular chirality can be used to control interfacial tension in multi-component mixtures of chiral molecules, and tuning the chirality makes it possible to produce and manipulate self-assembling complex chiral structures.

 
 
 
 
 
 

Articles and Letters

 
     
 
 
 
 
 

A sensing array of radically coupled genetic ‘biopixels’ ▶

 
 

Arthur Prindle, Phillip Samayoa, Ivan Razinkov, Tal Danino, Lev S. Tsimring et al.

 
 

Thousands of quorum-sensing Escherichia coli colonies are synchronized over centimetres using redox signalling to create ‘biopixels’ that can sense trace amounts of arsenic in water.

 
 
 
 
 
 

A gas cloud on its way towards the supermassive black hole at the Galactic Centre ▶

 
 

S. Gillessen, R. Genzel, T. K. Fritz, E. Quataert, C. Alig et al.

 
 

A gas cloud three times the mass of Earth is observed falling towards Sagittarius A*, the supermassive black hole at the centre of our Galaxy.

 
 
 
 
 
 

Fast core rotation in red-giant stars as revealed by gravity-dominated mixed modes ▶

 
 

Paul G. Beck, Josefina Montalban, Thomas Kallinger, Joris De Ridder, Conny Aerts et al.

 
 
 
 
 
 

Polar methane accumulation and rainstorms on Titan from simulations of the methane cycle ▶

 
 

T. Schneider, S. D. B. Graves, E. L. Schaller & M. E. Brown

 
 

Simulations reproduce previously unexplained features of Titan’s methane cycle, attributing them to atmospheric instabilities and cold-trapping of methane in the polar regions.

 
 
 
 
 
 

Demonstration of temporal cloaking ▶

 
 

Moti Fridman, Alessandro Farsi, Yoshitomo Okawachi & Alexander L. Gaeta

 
 

Temporal cloaking hides an event in time from being detected; here this is achieved by speeding up one end of a probe beam and slowing down the other to create a ‘time hole’ and to close it afterwards so that the signal amplitude of an event is much reduced.

 
 
 
 
 
 

Changing Arctic Ocean freshwater pathways ▶

 
 

James Morison, Ron Kwok, Cecilia Peralta-Ferriz, Matt Alkire, Ignatius Rigor et al.

 
 

The Arctic Oscillation, rather than the Beaufort High, is the main factor affecting the freshening of the Arctic Ocean since the 1990s.

 
 
 
 
 
 

News & Views

 
     
 
 
 
 
 

Astrophysics: The final plunge ▶

 
 

Mark Morris

 
 
 
 
 
 

Optical physics: How to hide in time ▶

 
 

Robert W. Boyd & Zhimin Shi

 
 
 
 
 
 

Materials science: A fresh twist for self-assembly ▶

 
 

Volker Schaller & Andreas R. Bausch

 
 
 
 
 
 

Biomechanics: Leaping lizards and dinosaurs ▶

 
 

R. McNeill Alexander

 
 
 
 
 

NEWS & COMMENT

 
 
 
 
 

Reach out about climate | New year, new science | Frontier experiments: Tough science | Kepler's surprise: The sounds of the stars | Higgs boson: The need for new physics | Sociology of science: Keep standards high | Books in brief | Sustainable development: Call to veto Brazil's forest-code revisions Alison G. Nazareno | Curiosity imaging: Phoenix first to see silt grains on Mars Michael Velbel

 
 
 
 
 
 

More Physical Sciences ▶

 
 
 
 
 
 
 
Earth & Environmental Sciences top
 
 
 
 
 
 

RESEARCH

 
 
 
 
 

Articles and Letters

 
     
 
 
 
 
 

Polar methane accumulation and rainstorms on Titan from simulations of the methane cycle ▶

 
 

T. Schneider, S. D. B. Graves, E. L. Schaller & M. E. Brown

 
 

Simulations reproduce previously unexplained features of Titan’s methane cycle, attributing them to atmospheric instabilities and cold-trapping of methane in the polar regions.

 
 
 
 
 
 

Changing Arctic Ocean freshwater pathways ▶

 
 

James Morison, Ron Kwok, Cecilia Peralta-Ferriz, Matt Alkire, Ignatius Rigor et al.

 
 

The Arctic Oscillation, rather than the Beaufort High, is the main factor affecting the freshening of the Arctic Ocean since the 1990s.

 
 
 
 
 
 

Structure of a methyl-coenzyme M reductase from Black Sea mats that oxidize methane anaerobically ▶

 
 

Seigo Shima, Martin Krueger, Tobias Weinert, Ulrike Demmer, Jörg Kahnt et al.

 
 

The crystal structure of the enzyme MCR from methanogenic archaea shows that it is very similar to that of methanotrophic archaea; the differences observed may tune the enzymes for their respective biological context within the sea mats.

 
 
 
 
 

NEWS & COMMENT

 
 
 
 
 

Reach out about climate | New year, new science | Sustainable development: Call to veto Brazil's forest-code revisions Alison G. Nazareno | National parks: Mauritius is putting conservation at risk F. B. Vincent Florens | Curiosity imaging: Phoenix first to see silt grains on Mars Michael Velbel

 
 
 
 
 
 

More Earth & Environmental Sciences ▶

 
 
 
 
 
 
 
 
 
 
 
 

NATURE REVIEWS IMMUNOLOGY CALENDAR 2012

In celebration of our 10th anniversary, Nature Reviews Immunology is delighted to bring you a FREE calendar for 2012.
www.nature.com/nri/calendars/2012
Happy New Year to all our readers!
See also our 10th anniversary VIEWPOINT and CROSSWORD:
Sponsored by: eBioscience

 
 
 
 
 
 
 
Careers & Jobs top
 
 
 
 
 
 
 

Women in business: Finding a way in ▶

 
 

Female scientists hoping to become entrepreneurs face obstacles — but there are organizations that can help.

 
 
 
     
 
 
 

Turning point: Tiago Branco ▶

 
 

UK postdoc hopes his award-winning essay will help open doors.

 
 
 
     
 
 
 

Careers related news & comment

 
     
 
 
 
 
 

Science publishing: How to stop plagiarism | Q&A: The science showman | National parks: Mauritius is putting conservation at risk F. B. Vincent Florens | Curiosity imaging: Phoenix first to see silt grains on Mars Michael Velbel | Shaping policy: Science and politics need more empathy Len Fisher

 
 
 
 
 
 

naturejobs.com

naturejobs.com Science jobs of the week

 
 
 

Research Associate in Models of Inflammation

 
 

King's College London 

 
 
 
 
 

Postdoctoral Position in Genomics, Bioinformatics, and Computational Biology

 
 

Albert Einstein College of Medicine (AECOM), Laboratory of Dr Zhengdong Zhang 

 
 
 
 
 

Breeding Expert

 
 

BGI 

 
 
 
 
 

Peer Reviewers

 
 

Enago 

 
 
 
 

No matter what your career stage, student, postdoc or senior scientist, you will find articles on naturejobs.com to help guide you in your science career. Keep up-to-date with the latest sector trends, vote in our reader poll and sign-up to receive the monthly Naturejobs newsletter.

 
 
 
 
  Nature events featured events  
 
 
 
 

natureevents.com - The premier science events website

natureevents featured events

 
 
 
 

Mexico Wind Power 2012

 
 

14-15.02.12 Mexico

 
 
 
 

Nature events is the premier resource for scientists looking for the latest scientific conferences, courses, meetings and symposia. Featured across Nature Publishing Group journals and centrally at natureevents.com it is an essential reference guide to scientific events worldwide.

 
 
 
 
 
 
 

Futures

 
     
 
 
 
 
 

1-9-4-blue-3-7-2-6-gamma-tetrahedron ▶

 
 

Ian Randal Strock

 
 
 
 
     
 

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