Scientific Reports Biological e-alert: 04 December 2018

04 December 2018       •Visit Scientific Reports •Submit your manuscript to Scientific Reports     Welcome to your Table of Contents e-alert for Scientific Reports           Biological Sciences               MSIpred: a python package for tumor microsatellite instability classification from tumor mutation annotation data using a support vector machine ▶     Chen Wang, Chun Liang             Coralline algal metabolites induce settlement and mediate the inductive effect of epiphytic microbes on coral larvae ▶     Luis A. Gómez-Lemos, Christopher Doropoulos, Elisa Bayraktarov et al.             Impaired male fertility and abnormal epididymal epithelium differentiation in mice lacking CRISP1 and CRISP4 ▶     Guillermo Carvajal, Nicolás Gastón Brukman, Mariana Weigel Muñoz et al.             SIRT3 deficiency-induced mitochondrial dysfunction and inflammasome formation in the brain ▶     Alpna Tyagi, Christy U Nguyen, Thomas Chong et al.             Phototransduction and circadian entrainment are the key pathways in the signaling mechanism for the baculovirus induced tree-top disease in the lepidopteran larvae ▶     Upendra Raj Bhattarai, Fengjiao Li, Mandira Katuwal Bhattarai et al.             Chk1 KA1 domain auto-phosphorylation stimulates biological activity and is linked to rapid proteasomal degradation ▶     Eun-Yeung Gong, Beatriz Hernández, Jessica Hernández Nielsen et al.             Echinometra mathaei and its ectocommensal shrimps: the role of sea urchin spinochrome pigments in the symbiotic association ▶     Lola Brasseur, Guillaume Caulier, Gilles Lepoint et al.             Nitrogen additions stimulate litter humification in a subtropical forest, southwestern China ▶     Qun Liu, Liyan Zhuang, Xiangyin Ni et al.             The NnaR orphan response regulator is essential for the utilization of nitrate and nitrite as sole nitrogen sources in mycobacteria ▶     Magdalena Antczak, Renata Płocińska, Przemysław Płociński et al.             Midostaurin reduces Regulatory T cells markers in Acute Myeloid Leukemia ▶     Lucas Gutierrez, Miran Jang, Tian Zhang et al.             Genus trace reveals the topological complexity and domain structure of biomolecules ▶     Sebastian Zając, Cody Geary, Ebbe Sloth Andersen et al.             Complex role of miR-130a-3p and miR-148a-3p balance on drug resistance and tumor biology in esophageal squamous cell carcinoma ▶     A. K. Eichelmann, C. Matuszcak, K. Lindner et al.             Replication of Resting State-Task Network Correspondence and Novel Findings on Brain Network Activation During Task fMRI in the Human Connectome Project Study ▶     Lisa D. Nickerson             Development and Characterization of a Spontaneously Metastatic Patient-Derived Xenograft Model of Human Prostate Cancer ▶     Tobias Lange, Su Jung Oh-Hohenhorst, Simon A. Joosse et al.             Ninjurin1 Plays a Crucial Role in Pulmonary Fibrosis by Promoting Interaction between Macrophages and Alveolar Epithelial Cells ▶     Seungho Choi, Jong Kyu Woo, Yeong-Su Jang et al.             Deciphering deterministic factors of predation pressures in deep time ▶     Makiko Ishikawa, Tomoki Kase, Hidekazu Tsutsui             Obesity and Type 2 Diabetes mellitus induce lipopolysaccharide tolerance in rat neutrophils ▶     Wilson Mitsuo Tatagiba Kuwabara, Caroline Naomi Fukusawa Yokota, Rui Curi et al.             Developmental pattern and structural factors of dendritic survival in cerebellar granule cells in vivo ▶     Matasha Dhar, Adam W. Hantman, Hiroshi Nishiyama             Crosstalk between SOX2 and cytokine signaling in endometrial carcinoma ▶     Chang-Jung Lee, Pi-Lin Sung, Ming-Han Kuo et al.             Higher lipid turnover and oxidation in cultured human myotubes from athletic versus sedentary young male subjects ▶     Jenny Lund, Siw A. Helle, Yuchuan Li et al.             Hypercapnia impaired cognitive and memory functions in obese patients with obstructive sleep apnoea ▶     Shu-Chin Kung, Yu-Chih Shen, En-Ting Chang et al.             Olfactory cleft proteome does not reflect olfactory performance in patients with idiopathic and postinfectious olfactory disorder: A pilot study ▶     Axel Wolf, Laura Liesinger, Stefan Spoerk et al.             Engineered K1F bacteriophages kill intracellular Escherichia coli K1 in human epithelial cells ▶     Christian Møller-Olsen, Siu Fung Stanley Ho, Ranti Dev Shukla et al.             Recordings in an integrating central neuron provide a quick way for identifying appropriate anaesthetic use in fish ▶     Peter Machnik, Elisabeth Schirmer, Laura Glück et al.             Engineering of a GLP-1 analogue peptide/anti-PCSK9 antibody fusion for type 2 diabetes treatment ▶     Matthieu Chodorge, Anthony J. Celeste, Joseph Grimsby et al.             Felis catus papillomavirus type-2 E6 binds to E6AP, promotes E6AP/p53 binding and enhances p53 proteasomal degradation ▶     Gennaro Altamura, Karen Power, Manuela Martano et al.             Investigating the neuroprotective effect of AAV-mediated β-synuclein overexpression in a transgenic model of synucleinopathy ▶     Dorian Sargent, Dominique Bétemps, Matthieu Drouyer et al.             MicroRNA cluster miR199a/214 are differentially expressed in female and male rats following nicotine self-administration ▶     Steven T. Pittenger, Victoria L. Schaal, Dalia Moore et al.             The central exons of the human MUC2 and MUC6 mucins are highly repetitive and variable in sequence between individuals ▶     Frida Svensson, Tiange Lang, Malin E. V. Johansson et al.             Incorporating Breast Anatomy in Computational Phenotyping of Mammographic Parenchymal Patterns for Breast Cancer Risk Estimation ▶     Aimilia Gastounioti, Meng-Kang Hsieh, Eric Cohen et al.             Description of a personality syndrome in a common and invasive ground beetle (Coleoptera: Carabidae) ▶     Sophie Labaude, Niamh O’Donnell, Christine T. Griffin             Selection and Validation of Novel RT-qPCR Reference Genes under Hormonal Stimuli and in Different Tissues of Santalum album ▶     Haifeng Yan, Yueya Zhang, Yuping Xiong et al.             Regulation of the Intranuclear Distribution of the Cockayne Syndrome Proteins ▶     Teruaki Iyama, Mustafa N. Okur, Tyler Golato et al.             High resolution X-ray and NMR structural study of human T-cell immunoglobulin and mucin domain containing protein-3 ▶     Amit K. Gandhi, Walter M. Kim, Zhen-Yu J. Sun et al.             High density Huh7.5 cell hollow fiber bioreactor culture for high-yield production of hepatitis C virus and studies of antivirals ▶     Anne F. Pihl, Anna F. Offersgaard, Christian K. Mathiesen et al.             Lactobacillus reuteri HCM2 protects mice against Enterotoxigenic Escherichia coli through modulation of gut microbiota ▶     Tianwei Wang, Kunling Teng, Gang Liu et al.             Gene mutation associated with esl mediates shifts on fungal community composition in rhizosphere soil of rice at grain-filling stage ▶     Puleng Letuma, Yasir Arafat, Muhammad Waqas et al.             Mapping of a responsible region for sex reversal upstream of Sox9 by production of mice with serial deletion in a genomic locus ▶     Yuya Ogawa, Miho Terao, Satoshi Hara et al.             1-Aminocyclopropane-1-carboxylic acid deaminase producing beneficial rhizobacteria ameliorate the biomass characters of Panicum maximum Jacq. by mitigating drought and salt stress ▶     Garima Tiwari, P. Duraivadivel, Satyawati Sharma et al.             Developmental trajectory of movement-related cortical oscillations during active sleep in a cross-sectional cohort of pre-term and full-term human infants ▶     Kimberley Whitehead, Judith Meek, Lorenzo Fabrizi             Bioaerosol Sampling for Respiratory Viruses in Singapore’s Mass Rapid Transit Network ▶     Kristen K. Coleman, Tham T. Nguyen, Su Yadana et al.             In silico discovery of a FOXM1 driven embryonal signaling pathway in therapy resistant neuroblastoma tumors ▶     Suzanne Vanhauwaert, Bieke Decaesteker, Sara De Brouwer et al.             Identification of Immune Signatures of Novel Adjuvant Formulations Using Machine Learning ▶     Sidhartha Chaudhury, Elizabeth H. Duncan, Tanmaya Atre et al.             Targeted-pig trial on safety and immunogenicity of serum-derived extracellular vesicles enriched fractions obtained from Porcine Respiratory and Reproductive virus infections ▶     Sergio Montaner-Tarbes, Elena Novell, Vicens Tarancón et al.             Mechanisms of fitness cost reduction for rifampicin-resistant strains with deletion or duplication mutations in rpoB ▶     Gerrit Brandis, Diarmaid Hughes             Sensitization of renal carcinoma cells to TRAIL-induced apoptosis by rocaglamide and analogs ▶     Ancy D. Nalli, Lauren E. Brown, Cheryl L. Thomas et al.             Prenatal retinoic acid exposure reveals candidate genes for craniofacial disorders ▶     Marie Berenguer, Muriel Darnaudery, Stéphane Claverol et al.             Paradoxical, causal effects of sensory gain modulation on motor inhibitory control – a tDCS, EEG-source localization study ▶     Julia Friedrich, Christian Beste             Brain-Specific Ultrastructure of Capillary Endothelial Glycocalyx and Its Possible Contribution for Blood Brain Barrier ▶     Yoshiaki Ando, Hideshi Okada, Genzou Takemura et al.             Pretreatment with Total Flavonoid Extract from Dracocephalum Moldavica L. Attenuates Ischemia Reperfusion-induced Apoptosis ▶     Cheng Zeng, Wen Jiang, Xiaoyi Yang et al.             Diffracted X-ray Blinking Tracks Single Protein Motions ▶     Hiroshi Sekiguchi, Masahiro Kuramochi, Keigo Ikezaki et al.             Electrophysiological measurement of ion channels on plasma/organelle membranes using an on-chip lipid bilayer system ▶     Koki Kamiya, Toshihisa Osaki, Kenji Nakao et al.             Physiological outcomes of calming behaviors support the resilience hypothesis in horses ▶     Chiara Scopa, Elisabetta Palagi, Claudio Sighieri et al.             Running in highly cushioned shoes increases leg stiffness and amplifies impact loading ▶     Juha-Pekka Kulmala, Jukka Kosonen, Jussi Nurminen et al.             Interplay between nitrogen fertilizer and biological nitrogen fixation in soybean: implications on seed yield and biomass allocation ▶     Santiago Tamagno, Victor O. Sadras, Jason W. Haegele et al.             Excitotoxic superoxide production and neuronal death require both ionotropic and non-ionotropic NMDA receptor signaling ▶     Angela M. Minnella, Jerry X. Zhao, Xiangning Jiang et al.             Discrimination of contagious and environmental strains of Streptococcus uberis in dairy herds by means of mass spectrometry and machine-learning ▶     Necati Esener, Martin J. Green, Richard D. Emes et al.             Alpha-tubulin acetyltransferase/MEC-17 regulates cancer cell migration and invasion through epithelial–mesenchymal transition suppression and cell polarity disruption ▶     Cheng-Che Lee, Yun-Ching Cheng, Chi-Yen Chang et al.             Contrasting phylogeographic pattern among Eudyptes penguins around the Southern Ocean ▶     M. J. Frugone, A. Lowther, D. Noll et al.             The characteristic, antioxidative and multiple organ protective of acidic-extractable mycelium polysaccharides by Pleurotus eryngii var. tuoliensis on high-fat emulsion induced-hypertriglyceridemic mice ▶     Zheng Gao, Qiangqiang Lai, Qihang Yang et al.             Nitrogen physiology of contrasting genotypes of Chenopodium quinoa Willd. (Amaranthaceae) ▶     Luisa Bascuñán-Godoy, Carolina Sanhueza, Katherine Pinto et al.             Vascular amounts and dispersion of caliber-classified vessels as key parameters to quantitate 3D micro-angioarchitectures in multiple myeloma experimental tumors ▶     Marco Righi, Silvia Laura Locatelli, Carmelo Carlo-Stella et al.             Modified VEGF-A mRNA induces sustained multifaceted microvascular response and accelerates diabetic wound healing ▶     Naidi Sun, Bo Ning, Kenny M. Hansson et al.             Evaluation of droplet digital PCR and next generation sequencing for characterizing DNA reference material for KRAS mutation detection ▶     Lianhua Dong, Shangjun Wang, Boqiang Fu et al.             Usp16 modulates Wnt signaling in primary tissues through Cdkn2a regulation ▶     Maddalena Adorno, Benedetta Nicolis di Robilant, Shaheen Shabbir Sikandar et al.             Day-to-day variations in sleep quality affect standing balance in healthy adults ▶     Luis Montesinos, Rossana Castaldo, Francesco P. Cappuccio et al.             2nd-order random lasing in a multimode diode-pumped graded-index fiber ▶     Ekaterina A. Evmenova, Alexey G. Kuznetsov, Ilya N. Nemov et al.             A novel cloning strategy for one-step assembly of multiplex CRISPR vectors ▶     Marc Zuckermann, Mario Hlevnjak, Haniyeh Yazdanparast et al.             3D microdevices that perform sample purification and multiplex qRT-PCR for early cancer detection with confirmation of specific RNAs ▶     Yusuke Kimura, Masashi Ikeuchi, Yoshinori Inoue et al.             The expansion of later Acheulean hominins into the Arabian Peninsula ▶     Eleanor M. L. Scerri, Ceri Shipton, Laine Clark-Balzan et al.             Glutamatergic and dopaminergic modulation of cortico-striatal circuits probed by dynamic calcium imaging of networks reconstructed in microfluidic chips ▶     Benjamin Lassus, Jérémie Naudé, Philippe Faure et al.             Diverse novel resident Wolbachia strains in Culicine mosquitoes from Madagascar ▶     Claire L. Jeffries, Luciano M. Tantely, Fara N. Raharimalala et al.             Exploration of deep terrestrial subsurface microbiome in Late Cretaceous Deccan traps and underlying Archean basement, India ▶     Avishek Dutta, Srimanti Dutta Gupta, Abhishek Gupta et al.             Temporal and spatial patterns of mitochondrial haplotype and species distributions in Siberian larches inferred from ancient environmental DNA and modeling ▶     Laura S. Epp, Stefan Kruse, Nadja J. Kath et al.             Prolonged systemic hyperglycemia does not cause pericyte loss and permeability at the mouse blood-brain barrier ▶     Maarja Andaloussi Mäe, Tian Li, Giacomo Bertuzzi et al.             Divergent responses to warming of two common co-occurring Mediterranean bryozoans ▶     Marta Pagès-Escolà, Bernat Hereu, Joaquim Garrabou et al.             Dynamic interaction of poly(A)-binding protein with the ribosome ▶     Kodai Machida, Tomoaki Shigeta, Yuki Yamamoto et al.             Stable isotopic evidence of nitrogen sources and C4 metabolism driving the world’s largest macroalgal green tides in the Yellow Sea ▶     Ivan Valiela, Dongyan Liu, Javier Lloret et al.             Evidence for Cognitive Placebo and Nocebo Effects in Healthy Individuals ▶     Zsolt Turi, Espen Bjørkedal, Luisa Gunkel et al.             Micro-RNAs, their target proteins, predispositions and the memory of filial imprinting ▶     Giorgi Margvelani, Maia Meparishvili, Tamar Kiguradze et al.             Interaction paths promote module integration and network-level robustness of spliceosome to cascading effects ▶     Paulo R. Guimarães, Mathias M. Pires, Maurício Cantor et al.             A gB/CD3 bispecific BiTE antibody construct for targeting Human Cytomegalovirus-infected cells ▶     Charlotte U. Brey, Julia Proff, Natascha Teufert et al.             The Effect of Ratio of Changing to Static Stimuli on the Attentional Capture ▶     Fuminori Ono             CLIP-170 is essential for MTOC repositioning during T cell activation by regulating dynein localisation on the cell surface ▶     Wei Ming Lim, Yuma Ito, Kumiko Sakata-Sogawa et al.             Increased seroprevalence of HAV and parvovirus B19 in children and of HEV in adults at diagnosis of autoimmune hepatitis ▶     Richard Taubert, Jana Diestelhorst, Norman Junge et al.             IMB-T130 targets 3-dehydroquinate synthase and inhibits Mycobacterium tuberculosis ▶     Ningyu Zhu, Xia Wang, Dongsheng Li et al.             Advanced spectroscopy-based phenotyping offers a potential solution to the ash dieback epidemic ▶     Caterina Villari, Arnaud Dowkiw, Rasmus Enderle et al.             Structural insight into D-xylose utilization by xylose reductase from Scheffersomyces stipitis ▶     Hyeoncheol Francis Son, Sun-Mi Lee, Kyung-Jin Kim                 • Scientific Reports events Directory featured events           natureevents directory featured events         The 3rd International Conference 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