Scientific Reports Biological e-alert: 27 November 2018

26 November 2018       •Visit Scientific Reports •Submit your manuscript to Scientific Reports     Welcome to your Table of Contents e-alert for Scientific Reports           Biological Sciences               Host-specific signatures of the cell wall changes induced by the plant parasitic nematode, Meloidogyne incognita ▶     Refik Bozbuga, Catherine J. Lilley, J. Paul Knox et al.             Proof of concept study of mass cytometry in septic shock patients reveals novel immune alterations ▶     Morgane Gossez, Thomas Rimmelé, Thibault Andrieu et al.             Density resistance evaluation of maize varieties through new “Density–Yield Model” and quantification of varietal response to gradual planting density pressure ▶     Liyuan Tang, Wei Ma, Mehmood Ali Noor et al.             Concurrent live imaging of DNA double-strand break repair and cell-cycle progression by CRISPR/Cas9-mediated knock-in of a tricistronic vector ▶     Kensuke Otsuka, Masanori Tomita             Cytokine and Chemokine Concentrations as Biomarkers of Feline Mycobacteriosis ▶     C. O’Halloran, L. McCulloch, L. Rentoul et al.             RNAm5Cfinder: A Web-server for Predicting RNA 5-methylcytosine (m5C) Sites Based on Random Forest ▶     Jianwei Li, Yan Huang, Xiaoyue Yang et al.             Effect of a Repeated Sprint Ability test on the muscle contractile properties in elite futsal players ▶     Javier Sánchez-Sánchez, David Bishop, Jorge García-Unanue et al.             Investigating the Neurological Correlates of Workplace Deviance Using a Rodent Model of Extinction ▶     J. Tabor, Y. Griep, R. Collins et al.             The presence of extracellular microRNAs in the media of cultured Drosophila cells ▶     Stijn Van den Brande, Marijke Gijbels, Niels Wynant et al.             Galiellalactone inhibits the STAT3/AR signaling axis and suppresses Enzalutamide-resistant Prostate Cancer ▶     Daksh Thaper, Sepideh Vahid, Ramandeep Kaur et al.             Adolescent conditioning affects rate of adult fear, safety and reward learning during discriminative conditioning ▶     Iris Müller, Alyson L. Brinkman, Elizabeth M. Sowinski et al.             Antimicrobial Compounds Effective against Candidatus Liberibacter asiaticus Discovered via Graft-based Assay in Citrus ▶     Chuanyu Yang, Yun Zhong, Charles A. Powell et al.             Modeling Diabetic Corneal Neuropathy in a 3D In Vitro Cornea System ▶     Phillip M. Deardorff, Tina B. McKay, Siran Wang et al.             Prevalence and Prognosis of Coexisting Frailty and Cognitive Impairment in Patients on Continuous Ambulatory Peritoneal Dialysis ▶     Chunyan Yi, Jianxiong Lin, Peiyi Cao et al.             Cyclic undecapeptide Cyclosporin A mediated inhibition of amyloid synthesis: Implications in alleviation of amyloid induced neurotoxicity ▶     Shadab Kazmi, Anzar Abdul Mujeeb, Mohammad Owais             AutoFoci, an automated high-throughput foci detection approach for analyzing low-dose DNA double-strand break repair ▶     Nicor Lengert, Johanna Mirsch, Ratna N. Weimer et al.             Growth Differentiation Factor 11 treatment leads to neuronal and vascular improvements in the hippocampus of aged mice ▶     Ceren Ozek, Richard C. Krolewski, Sean M. Buchanan et al.             CKD-506, a novel HDAC6-selective inhibitor, improves renal outcomes and survival in a mouse model of systemic lupus erythematosus ▶     Eun Wha Choi, Ji Woo Song, Nina Ha et al.             Whole genome amplification of cell-free DNA enables detection of circulating tumor DNA mutations from fingerstick capillary blood ▶     Rekha Gyanchandani, Erik Kvam, Ryan Heller et al.             Dorsal-zone-specific reduction of sensory neuron density in the olfactory epithelium following long-term exercise or caloric restriction ▶     Ayinuer Tuerdi, Shu Kikuta, Makoto Kinoshita et al.             Characterisation and use of a functional Gadd45g bacterial artificial chromosome ▶     Nick Warr, Joel May, Lydia Teboul et al.             On the use of abiotic sialic acids to attenuate cell inflammation ▶     Zhongwei Xue, Hu Zhao, Rui Zhu et al.             Association of C-type lectin 18 levels with extrahepatic manifestations in chronic HCV infection ▶     Tsai-Ling Liao, Ya-Lang Huang, Yi-Ming Chen et al.             The role of mid-insula in the relationship between cardiac interoceptive attention and anxiety: evidence from an fMRI study ▶     Yafei Tan, Dongtao Wei, Meng Zhang et al.             Genome-wide analysis of RNAs associated with Populus euphratica Oliv. heterophyll morphogenesis ▶     Shao-Wei Qin, Ren-Jun Jiang, Na Zhang et al.             Neuroprotection by Heat Shock Factor-1 (HSF1) and Trimerization-Deficient Mutant Identifies Novel Alterations in Gene Expression ▶     Zhe Qu, Anto Sam Crosslee Louis Sam Titus, Zhenyu Xuan et al.             Effects of Low Intensity Focused Ultrasound on Liposomes Containing Channel proteins ▶     Meghedi Babakhanian, Limin Yang, Bryan Nowroozi et al.             A link between plasma membrane calcium ATPase 2 (PMCA2), estrogen and estrogen receptor α signaling in mechanical pain ▶     Veronika Khariv, Cigdem Acioglu, Li Ni et al.             Seabird-affected taluses are denitrification hotspots and potential N2O emitters in the High Arctic ▶     Kentaro Hayashi, Yukiko Tanabe, Keisuke Ono et al.             The influence of surface chemistry on the kinetics and thermodynamics of bacterial adhesion ▶     Jun Kyun Oh, Yagmur Yegin, Fan Yang et al.             Engineering the hinge region of human IgG1 Fc-fused bispecific antibodies to improve fragmentation resistance ▶     Saori Suzuki, Hiroaki Annaka, Shota Konno et al.             A high-density genetic linkage map and QTL mapping for growth and sex of yellow drum (Nibea albiflora) ▶     Changliang Qiu, Zhaofang Han, Wanbo Li et al.             Analysis of regulator of G-protein signalling 2 (RGS2) expression and function during prostate cancer progression ▶     Anna Linder, Malin Hagberg Thulin, Jan-Erik Damber et al.             The prevalence and transcriptional activity of the mucosal microbiota of ulcerative colitis patients ▶     Aina E. Fossum Moen, Jonas Christoffer Lindstrøm, Tone Møller Tannæs et al.             Effects of Modulating Actin Dynamics on HER2 Cancer Cell Motility and Metastasis ▶     Sarah Nersesian, Rodette Williams, Daniel Newsted et al.             Grail attenuates influenza A virus infection and pathogenesis by inhibiting viral nucleoprotein ▶     Hui-Tsu Lin, Cheng-Cheung Chen, Pei-Yao Liu et al.             Nezara viridula (Hemiptera: Pentatomidae) transcriptomic analysis and neuropeptidomics ▶     Andrés Lavore, Lucila Perez-Gianmarco, Natalia Esponda-Behrens et al.             Foxi3 transcription factor activity is mediated by a C-terminal transactivation domain and regulated by the Protein Phosphatase 2A (PP2A) complex ▶     Sunita Singh, Rahul K. Jangid, Alyssa Crowder et al.             Defining Coronary Flow Patterns: Comprehensive Automation of Transthoracic Doppler Coronary Blood Flow ▶     Ian L. Sunyecz, Patricia E. McCallinhart, Kishan U. Patel et al.             In-depth analysis of Bacillus subtilis proteome identifies new ORFs and traces the evolutionary history of modified proteins ▶     Vaishnavi Ravikumar, Nicolas C. Nalpas, Viktoria Anselm et al.             Arabidopsis thaliana DGAT3 is a [2Fe-2S] protein involved in TAG biosynthesis ▶     Laure Aymé, Simon Arragain, Michel Canonge et al.             Historical translocations by Māori may explain the distribution and genetic structure of a threatened surf clam in Aotearoa (New Zealand) ▶     Philip M. Ross, Matthew A. Knox, Shade Smith et al.             BET Inhibition Improves NASH and Liver Fibrosis ▶     Sarah A. Middleton, Neetu Rajpal, Leanne Cutler et al.             Evidence for ‘critical slowing down’ in seagrass: a stress gradient experiment at the southern limit of its range ▶     El-Hacen M. El-Hacen, Tjeerd J. Bouma, Gregory S. Fivash et al.             High-throughput screens identify HSP90 inhibitors as potent therapeutics that target inter-related growth and survival pathways in advanced prostate cancer ▶     Keith H. Jansson, John B. Tucker, Lauren E. Stahl et al.             Identifying the region responsible for Brucella abortus MucR higher-order oligomer formation and examining its role in gene regulation ▶     Luciano Pirone, Joshua Edison Pitzer, Gianluca D’Abrosca et al.             Redirecting Primary Metabolism to Boost Production of Tyrosine-Derived Specialised Metabolites in Planta ▶     Alfonso Timoneda, Hester Sheehan, Tao Feng et al.             Alleles of a gene differ in pleiotropy, often mediated through currency metabolite production, in E. coli and yeast metabolic simulations ▶     Deya Alzoubi, Abdelmoneim Amer Desouki, Martin J. Lercher             Comparative analysis of nucleus-encoded plastid-targeting proteins in Rafflesia cantleyi against photosynthetic and non-photosynthetic representatives reveals orthologous systems with potentially divergent functions ▶     Siuk-Mun Ng, Xin-Wei Lee, Mohd-Noor Mat-Isa et al.             Development of a multi-locus CRISPR gene drive system in budding yeast ▶     Yao Yan, Gregory C. Finnigan             Development of whole brain versus targeted dentate gyrus irradiation model to explain low to moderate doses of exposure effects in mice ▶     M. Dos Santos, D. Kereselidze, C. Gloaguen et al.             Pivotal role of bZIPs in amylose biosynthesis by genome survey and transcriptome analysis in wheat (Triticum aestivum L.) mutants ▶     Pankaj Kumar, Ankita Mishra, Himanshu Sharma et al.             Suppression of Hepatic Bile Acid Synthesis by a non-tumorigenic FGF19 analogue Protects Mice from Fibrosis and Hepatocarcinogenesis ▶     Raffaella Maria Gadaleta, Natasha Scialpi, Claudia Peres et al.             Preparation of Lauroyl Grafted Alginate-Psyllium Husk Gel Composite Film with Enhanced Physicochemical, Mechanical and Antimicrobial Properties ▶     Clara Fernandes, Pratap Chandra Acharya, Shikha Bhatt             Interplay among steroids, body condition and immunity in response to long-term captivity in toads ▶     Stefanny Christie Monteiro Titon, Braz Titon Junior, Vania Regina Assis et al.             Differential impacts of different keyboard inputting methods on reading and writing skills ▶     Wai Ting Siok, Chun Yin Liu             Single-cell imaging of phosphorus uptake shows that key harmful algae rely on different phosphorus sources for growth ▶     Niels J. Schoffelen, Wiebke Mohr, Timothy G. Ferdelman et al.             DENV-1 Genotype V in Brazil: Spatiotemporal dispersion pattern reveals continuous co-circulation of distinct lineages until 2016 ▶     Fernanda de Bruycker-Nogueira, Thiara Manuele Alves Souza, Thaís Chouin-Carneiro et al.             HIV-1 Envelope Glycoproteins Induce the Production of TNF-α and IL-10 in Human Monocytes by Activating Calcium Pathway ▶     Rémi Planès, Manutea Serrero, Kaoutar Leghmari et al.             Genome-wide prediction of bacterial effector candidates across six secretion system types using a feature-based statistical framework ▶     Andi Dhroso, Samantha Eidson, Dmitry Korkin             Hyperlipidemia, statin use and dengue severity ▶     Po Ying Chia, Htet Lin Htun, Wei Ping Ling et al.             Wide-field choroidal thickness profile in healthy eyes ▶     Mohammed Abdul Rasheed, Sumit Randhir Singh, Alessandro Invernizzi et al.             US gynecologists’ estimates and beliefs regarding ovarian cancer screening’s effectiveness 5 years after release of the PLCO evidence ▶     Odette Wegwarth, Gerd Gigerenzer             Impact of uranium uptake on isotopic fractionation and endogenous element homeostasis in human neuron-like cells ▶     Eduardo Paredes, Emilie Avazeri, Véronique Malard et al.             COMP and TSP-4 interact specifically with the novel GXKGHR motif only found in fibrillar collagens ▶     Jan M. Gebauer, Anna Köhler, Helen Dietmar et al.             Identifying chondroprotective diet-derived bioactives and investigating their synergism ▶     Rose K. Davidson, Jonathan Green, Sarah Gardner et al.             Machine learning based classification of cells into chronological stages using single-cell transcriptomics ▶     Sumeet Pal Singh, Sharan Janjuha, Samata Chaudhuri et al.             Generation of uniform-sized multicellular tumor spheroids using hydrogel microwells for advanced drug screening ▶     Jong Min Lee, Da Yeon Park, Letao Yang et al.             Exposure to Chemical Cues from Predator-Exposed Conspecifics Increases Reproduction in a Wild Rodent ▶     M. Haapakoski, A. A. Hardenbol, Kevin D. Matson             FAST-1 antisense RNA epigenetically alters FXN expression ▶     Hajar Mikaeili, Madhavi Sandi, Aurélien Bayot et al.             Effect-based assessment of recipient waters impacted by on-site, small scale, and large scale waste water treatment facilities – combining passive sampling with in vitro bioassays and chemical analysis ▶     Anna Kjerstine Rosenmai, Johan Lundqvist, Pablo Gago-Ferrero et al.             A split luciferase-based probe for quantitative proximal determination of Gαq signalling in live cells ▶     Timo Littmann, Takeaki Ozawa, Carsten Hoffmann et al.             The absence of SigX results in impaired carbon metabolism and membrane fluidity in Pseudomonas aeruginosa ▶     Maud Fléchard, Rachel Duchesne, Ali Tahrioui et al.             Root Mean Square Minimum Distance as a Quality Metric for Stochastic Optical Localization Nanoscopy Images ▶     Yi Sun             Evaluation of Structure-Function Relationships in Longitudinal Changes of Glaucoma using the Spectralis OCT Follow-Up Mode ▶     Kenji Suda, Tadamichi Akagi, Hideo Nakanishi et al.             Bone histology provides insights into the life history mechanisms underlying dwarfing in hipparionins ▶     Guillem Orlandi-Oliveras, Carmen Nacarino-Meneses, George D. Koufos et al.             Neurofilament heavy polypeptide protects against reduction in synaptopodin expression and prevents podocyte detachment ▶     Juan Wang, Teruo Hidaka, Yu Sasaki et al.             Eight-month-old infants’ behavioral responses to peers’ emotions as related to the asymmetric frontal cortex activity ▶     Maria M. Crespo-Llado, Ross Vanderwert, Elisa Roberti et al.             Nitrogen acquisition and resource allocation strategies in temperate seagrass Zostera nigricaulis: Uptake, assimilation and translocation processes ▶     S. Nayar, M. G. K. Loo, J. E. Tanner et al.             Seasonal succession of ciliate Mesodinium spp. with red, green, or mixed plastids and their association with cryptophyte prey ▶     Goh Nishitani, Mineo Yamaguchi             Reduced Uteroplacental Perfusion Pressure (RUPP) causes altered trophoblast differentiation and pericyte reduction in the mouse placenta labyrinth ▶     Bryony V. Natale, Prutha Mehta, Priscilla Vu et al.             Impact of preanalytical conditions on plasma concentration and size distribution of extracellular vesicles using Nanoparticle Tracking Analysis ▶     Simin Jamaly, Cathrine Ramberg, Randi Olsen et al.             Benefits of pallidal stimulation in dystonia are linked to cerebellar volume and cortical inhibition ▶     Anna Fečíková, Robert Jech, Václav Čejka et al.             The Trans Golgi Region is a Labile Intracellular Ca2+ Store Sensitive to Emetine ▶     Martín-Leonardo Gallegos-Gómez, Elisa Greotti, María-Cristina López-Méndez et al.             Investigating social-contextual determinants of cooperation in incarcerated violent offenders ▶     Jonathan Scheeff, Aiste Jusyte, Michael Schönenberg             Analysis of Zika virus neutralizing antibodies in normal healthy Thais ▶     Wannapa Sornjai, Janejira Jaratsittisin, Prasert Auewarakul et al.             Limited prefrontal cortical regulation over the basolateral amygdala in adolescent rats ▶     Ryan A. Selleck, Wei Zhang, Hannah D. Samberg et al.             Deterioration of willow seeds during storage ▶     María Paula López-Fernández, Laura Moyano, María Daniela Correa et al.             Grazers extend blue carbon transfer by slowing sinking speeds of kelp detritus ▶     Thomas Wernberg, Karen Filbee-Dexter             Need for high-resolution Genetic Analysis in iPSC: Results and Lessons from the ForIPS Consortium ▶     Bernt Popp, Mandy Krumbiegel, Janina Grosch et al.             A computational model of internal representations of chemical gradients in environments for chemotaxis of Caenorhabditis elegans ▶     Zu Soh, Kazuma Sakamoto, Michiyo Suzuki et al.             Core genes in diverse dinoflagellate lineages include a wealth of conserved dark genes with unknown functions ▶     Timothy G. Stephens, Mark A. Ragan, Debashish Bhattacharya et al.             Isolation and characterization of 21 polymorphic microsatellite loci for the rockpool shrimp Palaemon elegans using Illumina MiSeq sequencing ▶     Inés González-Castellano, Alejandra Perina, Ana M. González-Tizón et al.             A refined two-step oligoribonucleotide interference-PCR method for precise discrimination of nucleotide differences ▶     Toshitsugu Fujita, Miyuki Yuno, Fusako Kitaura et al.             Plant pathogen responses to Late Pleistocene and Holocene climate change in the central Atacama Desert, Chile ▶     Jamie R. Wood, Francisca P. Díaz, Claudio Latorre et al.             Origin of the largest South American transcontinental water divide ▶     Alexandre Cunha Ribeiro, Claudio Riccomini, Jayme Alfredo Dexheimer Leite             The human olfactory cleft mucus proteome and its age-related changes ▶     Keiichi Yoshikawa, Hong Wang, Cristina Jaen et al.             Pre-B acute lymphoblastic leukemia expresses cell surface nucleolin as a 9-O-acetylated sialoglycoprotein ▶     Eun Ji Joo, Brian R Wasik, Colin Parrish et al.                 • 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