Thursday, November 22, 2018

Nature contents: 22 November 2018

 
  journal cover  
Nature Volume 563 Issue 7732
 
This Week  
 
 
Editorial  
 
 
 
First flight of ion-drive aircraft
Brexit end game leaves much to play for
Stop exploitation of foreign postdocs in the United States
 
World View  
 
 
 
America, don't throw global talent away
William Kerr
Research Highlights  
 
 
 
This issue's Research Highlights
Selections from the scientific literature.
Seven Days  
 
 
 
Mars rover, French research integrity and NIPS renamed
 
 


It's Time for Precision Genomics

Current bulk NGS methods are inadequate to fully characterize cancer. Targeted single-cell DNA analysis resolves genetic heterogeneity, which has critical implications in understanding tumor evolution and the acquisition of therapeutic resistance. Read our spotlight and learn how you can use Tapestri to move precision medicine forward.

Learn More
 
 
News in Focus
 
News  
 
 
 
Largest overhaul of scientific units since 1875 wins approval
Elizabeth Gibney
Brexit: what the draft deal means for science
Elizabeth Gibney, Holly Else
Lab-grown 'mini brains' produce electrical patterns that resemble those of premature babies
Sara Reardon
Ban on 'gene drives' is back on the UN's agenda — worrying scientists
Ewen Callaway
Antarctic scientists begin hunt for sky's 'detergent'
Nicky Phillips
World's first automated volcano forecast predicts Mount Etna's eruptions
Shannon Hall
Features  
 
 
 
Why extreme rains are gaining strength as the climate warms
Alexandra Witze
The microscope revolution that's sweeping through materials science
Rachel Courtland
 
 
Multimedia  
 
 
Nature Podcast 22 November 2018
This week, a solid-state plane engine, and 'mosaicism' in brain cells.
 
   
 
Comment
 
Comment  
 
 
 
Quantum computers put blockchain security at risk
Aleksey K. Fedorov, Evgeniy O. Kiktenko, Alexander I. Lvovsky
Books and Arts  
 
 
 
The environment: what's in a word?
Huw Lewis-Jones
Rock legend retells the race to the Moon — in 3D
May Chiao
The Doctor Who theme and beyond: female pioneers of electronic music
Joanne Baker
Correspondence  
 
 
 
African clinician scientists — mentors and networks help
Salome Maswime, Gwinyai Masukume, Nomathemba Chandiwana
Lab life — when privileged are a minority, equity stands a chance
Amin Aalipour
Lessons from recordings lost in Brazil fire: deposit and back up
Simone Dena, Raoni Rebouças, Guilherme Augusto-Alves et al.
Patchwork regulation won't stop antimicrobial resistance
Claas Kirchhelle
Obituary  
 
 
 
Paul G. Allen (1953–2018)
Christof Koch
 
 
Careers
 
Features  
 
 
 
Why graduate students should get involved in advocacy
Kendall Powell
 
 
Futures
 
How it feels to be swallowed by a black hole
Gretchen Tessmer
 
 
Research
 
NEW ONLINE  
 
 
 
Somatic APP gene recombination in Alzheimer's disease and normal neurons
The gene for the amyloid precursor protein (APP) shows somatic gene recombination in neurons, and the abundance and diversity of APP variants is increased in neurons from individuals with Alzheimer's disease.
Ming-Hsiang Lee, Benjamin Siddoway, Gwendolyn E. Kaeser et al.
Distinct activity-gated pathways mediate attraction and aversion to CO2 in Drosophila
Drosophila melanogaster are attracted to CO2 when in an active, foraging state but experience aversion to CO2 at low-activity levels, whereas they are attracted to ethanol in all behavioural states.
Floris van Breugel, Ainul Huda, Michael H. Dickinson
Helios is a key transcriptional regulator of outer hair cell maturation
Ikzf2, which encodes the transcription factor Helios, is identified as a crucial regulator of gene expression in maturing cochlear outer hair cells, and overexpression of Ikzf2 in inner hair cells induces prestin expression and electromotility.
Lauren Chessum, Maggie S. Matern, Michael C. Kelly et al.
Efferocytosis induces a novel SLC program to promote glucose uptake and lactate release
Distinct transcriptional programs are activated during different stages of apoptotic cell engulfment, including a unique program of genes coding for solute carrier proteins and enzymes in the glycolytic pathway.
Sho Morioka, Justin S. A. Perry, Michael H. Raymond et al.
Quantum control of surface acoustic-wave phonons
A non-classical superposition of zero- and one-phonon mechanical Fock states is generated and measured by strongly coupling a surface acoustic-wave resonator to a superconducting qubit.
K. J. Satzinger, Y. P. Zhong, H.-S. Chang et al.
TIC236 links the outer and inner membrane translocons of the chloroplast
TIC236 is an inner-membrane protein that binds to the outer-membrane channel TOC75 to create a long, stable bridge that enables the transport of proteins into chloroplasts.
Yih-Lin Chen, Lih-Jen Chen, Chiung-Chih Chu et al.
A bacterium's enemy isn't your friend
The bacterium Staphylococcus aureus is a leading cause of hard-to-treat human infections. It now seems that, if the bacterium is infected by a virus, a viral enzyme helps the microbe to evade detection by the immune system.
Michael S. Gilmore, Ona K. Miller
Mannose impairs tumour growth and enhances chemotherapy
Mannose reduces the growth of tumour cells by impairing the metabolism of glucose, and enhances cell death when used in combination with conventional chemotherapy.
Pablo Sierra Gonzalez, James O'Prey, Simone Cardaci et al.
U–Pb-dated flowstones restrict South African early hominin record to dry climate phases
Climate-driven periodicity of flowstone accretion between 3.2 and 1.3 million years ago in Cradle of Humankind caves reveals that the presence of hominin fossils reflects accumulation in open caves during intermittent, substantially drier phases.
Robyn Pickering, Andy I. R. Herries, Jon D. Woodhead et al.
Creation and control of multi-phonon Fock states in a bulk acoustic-wave resonator
Circuit quantum acoustodynamics is used to achieve controlled generation of multi-phonon Fock states in a bulk acoustic-wave resonator, which are demonstrated to have a quantum nature.
Yiwen Chu, Prashanta Kharel, Taekwan Yoon et al.
Exit route evolved into entry path in plants
Chloroplast organelles in plant cells are thought to have evolved from bacterial cells. It emerges that the protein-import system in chloroplasts arose from components that export proteins out of bacteria.
Danny J. Schnell
Structural plasticity of D3–D14 ubiquitin ligase in strigolactone signalling
The plant F-box protein D3 has a C-terminal α-helix that switches between two conformational states, allowing the α/β hydrolase D14 to recruit the transcription repressor D53 for strigolactone-dependent degradation.
Nitzan Shabek, Fabrizio Ticchiarelli, Haibin Mao et al.
A newly discovered mechanism driving neuronal mutations in Alzheimer's disease
Variable brain-specific mutations have been observed in Alzheimer's disease. One mechanism underlying this mosaicism involves integration of variant gene copies back into the neuronal genome.
Guoliang Chai, Joseph G. Gleeson
Methicillin-resistant Staphylococcus aureus alters cell wall glycosylation to evade immunity
Strains of methicillin-resistant Staphylococcus aureus use a prophage-encoded glycosyltransferase to alter the glycosylation of their wall teichoic acid and thereby evade antibody-mediated immune responses.
David Gerlach, Yinglan Guo, Cristina De Castro et al.
Amphioxus functional genomics and the origins of vertebrate gene regulation
Genomic, epigenomic and transcriptomic data derived from the Mediterranean amphioxus (Branchiostoma lanceolatum) provide insights into the evolution of the genomic regulatory landscape of chordates.
Ferdinand Marlétaz, Panos N. Firbas, Ignacio Maeso et al.
From the archive
What Nature said about the 1968 flu epidemic and the reinstatement of public weather forecasts in the United Kingdom at the end of the First World War.
Reduced oxygen consumption by fat cells improves metabolic defects
Low oxygen levels are a hallmark of expanding fat tissue in obesity, and can lead to type 2 diabetes. In addition to a lack of adequate blood supply, increased oxygen demand in fat cells now emerges as being key to this harmful state.
Nolwenn Joffin, Philipp E. Scherer
Change in future climate due to Antarctic meltwater
Accounting for meltwater from the Antarctic Ice Sheet in simulations of global climate leads to substantial changes in future climate projections and identifies a potential feedback mechanism that exacerbates melting.
Ben Bronselaer, Michael Winton, Stephen M. Griffies et al.
VCAM-1+ macrophages guide the homing of HSPCs to a vascular niche
In zebrafish embryogenesis, nascent haematopoietic stem and progenitor cells (HSPCs), homing to a vascular niche for retention, are ushered by patrolling and guiding macrophages through integrin-mediated cell-cell recognition.
Dantong Li, Wenzhi Xue, Mei Li et al.
Late Middle Pleistocene Levallois stone-tool technology in southwest China
Levallois stone-tool technology found at the Guanyindong Cave site in southwest China was dated to approximately 170,000–80,000 years ago, which is much earlier than previously thought.
Yue Hu, Ben Marwick, Jia-Fu Zhang et al.
Cryptic connections illuminate pathogen transmission within community networks
Cryptic connections facilitate the community-wide spread of disease both within and among species.
Joseph R. Hoyt, Kate E. Langwig, J. Paul White et al.
Long-sought decay of the Higgs boson seen
Measurements of the strength of interactions between the Higgs boson and other particles test the current model of particle physics. A key part of this model has been confirmed by observing the most common decay of the Higgs boson.
Boris Tuchming
 
News & Views  
 
 
 
Flying with ionic wind
Franck Plouraboué
A neurodegenerative-disease protein forms beneficial aggregates in healthy muscle
Lindsay A. Becker, Aaron D. Gitler
A new road to cancer-drug resistance
Katharina Schlacher
 
Nature Outlook: Brain cancer

The uncontrolled growth of a tumour inside the brain creates an extraordinarily potent threat to our being. A diagnosis of brain cancer still carries the high likelihood of death within five years. But efforts to prolong survival are advancing on several fronts.

Access free online

Produced with support from Novocure
Efficiency breakthrough for radical LEDs
Tetsuro Kusamoto, Hiroshi Nishihara
Nanofibres induce remodelling of cell membranes
John R. Dutcher
Improved mosquito genome points to population-control strategies
Susan E. Celniker
Perspectives  
 
 
 
Structural superlubricity and ultralow friction across the length scales
The phenomenon of ultralow friction between sliding incommensurate crystal surfaces—structural superlubricity—is examined, and the challenges and opportunities involved in its extension to the macroscale are assessed.
Oded Hod, Ernst Meyer, Quanshui Zheng et al.
LEDs for photons, physiology and food
This Perspective discusses developments in LED-based solid-state lighting for physiological and agricultural applications, and the anticipated benefits in terms of health and productivity.
P. M. Pattison, J. Y. Tsao, G. C. Brainard et al.
Articles  
 
 
 
Improved reference genome of Aedes aegypti informs arbovirus vector control
An improved, fully re-annotated Aedes aegypti genome assembly (AaegL5) provides insights into the sex-determining M locus, chemosensory systems that help mosquitoes to hunt humans and loci involved in insecticide resistance and will help to generate intervention strategies to fight this deadly disease vector.
Benjamin J. Matthews, Olga Dudchenko, Sarah B. Kingan et al.
TDP-43 and RNA form amyloid-like myo-granules in regenerating muscle
Cytoplasmic, amyloid-like oligomeric assemblies that contain TDP-43 are increased in damaged tissues with elevated regeneration, thereby enhancing the possibility of amyloid fibre formation and/or aggregation of TDP-43 in disease.
Thomas O. Vogler, Joshua R. Wheeler, Eric D. Nguyen et al.
Mechanoresponsive stem cells acquire neural crest fate in jaw regeneration
Reversion of adult skeletal stem cells to a developmental state underlies the growth of new bone during jaw regeneration, in a process that relies on mechanotransduction via the focal adhesion kinase protein.
Ryan C. Ransom, Ava C. Carter, Ankit Salhotra et al.
DYNLL1 binds to MRE11 to limit DNA end resection in BRCA1-deficient cells
DYNLL1 antagonizes end resection of DNA double-strand breaks, thereby inhibiting homologous repair, and the loss of DYNLL1 correlates with poor progression-free survival of patients with BRCA1-mutant ovarian cancer.
Yizhou Joseph He, Khyati Meghani, Marie-Christine Caron et al.
Letters  
 
 
 
Repeated multi-qubit readout and feedback with a mixed-species trapped-ion register
A multi-qubit mixed-species register is used for repeated correlation measurements using conditional feedback to stabilize two-qubit subspaces and Bell states, achieving up to 50 sequential measurements with negligible crosstalk.
V. Negnevitsky, M. Marinelli, K. K. Mehta et al.
Flight of an aeroplane with solid-state propulsion
A solid-state propulsion system can sustain powered flight, as demonstrated by an electroaerodynamically propelled heavier-than-air aeroplane.
Haofeng Xu, Yiou He, Kieran L. Strobel et al.
Efficient radical-based light-emitting diodes with doublet emission
Organic light-emitting devices containing radical emitters can achieve an efficiency of 27 per cent at deep-red and infrared wavelengths based on the excitation of spin doublets, rather than singlet or triplet states.
Xin Ai, Emrys W. Evans, Shengzhi Dong et al.
Efficient and stable emission of warm-white light from lead-free halide double perovskites
After alloying with metal cations, a lead-free halide double perovskite shows stable performance and remarkably efficient white-light emission, with possible applications in lighting and display technologies.
Jiajun Luo, Xiaoming Wang, Shunran Li et al.
Enhanced strength and ductility in a high-entropy alloy via ordered oxygen complexes
Ordered oxygen complexes in high-entropy alloys enhance both strength and ductility in these compositionally complex solid solutions.
Zhifeng Lei, Xiongjun Liu, Yuan Wu et al.
Twentieth-century contribution to sea-level rise from uncharted glaciers
From 1901 to 2015, missing and disappeared glaciers produced a rise in sea level that may enable the historical budget for global-mean sea-level rise to be closed without recourse to an undiscovered physical process.
David Parkes, Ben Marzeion
Dinosaur egg colour had a single evolutionary origin
A phylogenetic assessment based on Raman microspectroscopy of pigment traces in fossilized eggshells from all major dinosaur clades reveals that eggshell coloration and pigment pattern originated in nonavian theropod dinosaurs.
Jasmina Wiemann, Tzu-Ruei Yang, Mark A. Norell
Protocadherin-1 is essential for cell entry by New World hantaviruses
New World hantaviruses—which cause a severe human respiratory disease—use surface glycoproteins to bind to the human protocadherin-1 protein and enter endothelial cells in vitro; depleting protocadherin-1 in Syrian golden hamsters largely protects against disease.
Rohit K. Jangra, Andrew S. Herbert, Rong Li et al.
The metabolite BH4 controls T cell proliferation in autoimmunity and cancer
Tetrahydrobiopterin (BH4) is an enzyme co-factor that is involved in the nervous system; it is shown here to also function in T cell activation and proliferation, with roles in autoimmunity, allergic inflammation and cancer.
Shane J. F. Cronin, Corey Seehus, Adelheid Weidinger et al.
Autophagy maintains tumour growth through circulating arginine
Mice with whole-body or liver-specific deletion of Atg7 release circulating arginase I and have reduced levels of serum arginine, which impairs the growth of allografted arginine-auxotrophic tumours.
Laura Poillet-Perez, Xiaoqi Xie, Le Zhan et al.
POLAR-guided signalling complex assembly and localization drive asymmetric cell division
POLAR, identified in a survey of the protein interactome of BRASSINOSTEROID INSENSITIVE 2 in Arabidopsis thaliana, has a key role in coordinating cell polarity and enabling asymmetric cell division.
Anaxi Houbaert, Cheng Zhang, Manish Tiwari et al.
Sensitive tumour detection and classification using plasma cell-free DNA methylomes
An immunoprecipitation-based protocol is developed to analyse DNA methylation in small quantities of circulating cell-free DNA, and can detect and classify cancers in plasma samples from several tumour types.
Shu Yi Shen, Rajat Singhania, Gordon Fehringer et al.
The entropic force generated by intrinsically disordered segments tunes protein function
The carboxy terminus of human UDP-α-d-glucose-6-dehydrogenase is structurally disordered, but has sequence-independent effects on the conformation of the enzyme and binding of an allosteric inhibitor, suggesting a reason for the persistence of intrinsically disordered peptide segments in the proteome.
Nicholas D. Keul, Krishnadev Oruganty, Elizabeth T. Schaper Bergman et al.
 
 
Winners announced!

We are delighted to announce the first ever winners of the Nature Research Awards for Inspiring Science and Innovating Science, in partnership with The Estée Lauder Companies. Congratulations to both our Award winners!

See who's won >

In partnership with The Estée Lauder Companies.

 
 
Amendments & Corrections
 
Author Correction: Global land change from 1982 to 2016
Xiao-Peng Song, Matthew C. Hansen, Stephen V. Stehman et al.
Author Correction: EZH2 inhibition sensitizes BRG1 and EGFR mutant lung tumours to TopoII inhibitors
Christine M. Fillmore, Chunxiao Xu, Pooja T. Desai et al.
Publisher Correction: Xenon isotopic constraints on the history of volatile recycling into the mantle
Rita Parai, Sujoy Mukhopadhyay
Publisher Correction: Magnetoelectric inversion of domain patterns
N. Leo, V. Carolus, J. S. White et al.
 
 
Nature Outlook
 
Nature Outlook  
 
 
 
Skin
 
 
 
 
 

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