Scientific Reports Biology ealerts: 16th October 2018

15 October 2018       •Visit Scientific Reports •Submit your manuscript to Scientific Reports     Welcome to your Table of Contents e-alert for Scientific Reports               SPOTLIGHT ON KANAZAWA  An alternative Japan experience - Meet the sides of Japanese cities that most international researchers never see                 Biological Sciences               Inferring ancestral range reconstruction based on trilobite records: a study-case on Metacryphaeus (Phacopida, Calmoniidae) ▶     Fábio Augusto Carbonaro, Max Cardoso Langer, Silvio Shigueo Nihei et al.             Regional adiposity and markers of inflammation in pre-school age children ▶     Kerri Z. Delaney, Catherine A. Vanstone, Hope A. Weiler et al.             Lipid-dependent deposition of alpha-synuclein and Tau on neuronal Secretogranin II-positive vesicular membranes with age ▶     Oeystein R. Brekk, Alyssa Moskites, Ole Isacson et al.             Farnesol-induced hyperbranched morphology with short hyphae and bulbous tips of Coriolus versicolor ▶     Ke-Feng Wang, Chen Guo, Fang Ju et al.             Daily HIV pre-exposure prophylaxis (PrEP) with tenofovir disoproxil fumarate-emtricitabine reduced Streptococcus and increased Erysipelotrichaceae in rectal microbiota ▶     Michael P. Dubé, Sung Yong Park, Heather Ross et al.             Integration of color and intensity increases time signal stability for the human circadian system when sunlight is obscured by clouds ▶     T. Woelders, E. J. Wams, M. C. M. Gordijn et al.             Fundamental Understanding of Cellular Water Transport Process in Bio-Food Material during Drying ▶     Md. Imran H. Khan, Troy Farrell, S. A. Nagy et al.             Showcasing the role of seawater in bacteria recruitment and microbiome stability in sponges ▶     Marta Turon, Joan Cáliz, Leire Garate et al.             Cytopathological Study of the Circulating Tumor Cells filtered from the Cancer Patients' Blood using Hydrogel-based Cell Block Formation ▶     Yoon-Tae Kang, Young Jun Kim, Tae Hee Lee et al.             Cytometric analysis of adipose tissue reveals increments of adipocyte progenitor cells after weight loss induced by bariatric surgery ▶     Jesús García-Rubio, Josefa León, Anaïs Redruello-Romero et al.             A dimeric fluorescent protein yields a bright, red-shifted GEVI capable of population signals in brain slice ▶     Bumjun Yi, Bok Eum Kang, Sungmoo Lee et al.             Reduced graphene oxide triggered epithelial-mesenchymal transition in A549 cells ▶     Yanyan Liao, Weiyi Wang, Xiaomei Huang et al.             Effects of dietary protein restriction followed by realimentation on growth performance and liver transcriptome alterations of lamb ▶     K. Cui, B. Wang, T. Ma et al.             Selective DNAM-1 expression on small peritoneal macrophages contributes to CD4+ T cell costimulation ▶     Eri Takenaka, Anh Van Vo, Yumi Yamashita-Kanemaru et al.             Discovering Genetic Factors for psoriasis through exhaustively searching for significant second order SNP-SNP interactions ▶     Kwan-Yeung Lee, Kwong-Sak Leung, Nelson L. S. Tang et al.             Comparative transcriptomic analysis reveals common molecular factors responsive to heat and drought stress in Agrostis stolonifera ▶     Yi Xu, Bingru Huang             Endocrine therapy-resistant breast cancer model cells are inhibited by soybean glyceollin I through Eleanor non-coding RNA ▶     Tatsuro Yamamoto, Chiyomi Sakamoto, Hiroaki Tachiwana et al.             Improving face identity perception in age-related macular degeneration via caricaturing ▶     Jo Lane, Emilie M. F. Rohan, Faran Sabeti et al.             High-ranking alleviates male local competition in lek mating systems ▶     Fabio Giavazzi, Nicola Saino, Alberto Vailati             Establishment of porcine enterocyte/myofibroblast co-cultures for the growth of porcine rota- and coronaviruses ▶     Tingting Cui, Sebastiaan Theuns, Lowiese M. B. Desmarets et al.             Bioactive Hydrogel Marbles ▶     Álvaro J. Leite, Nuno M. Oliveira, Wenlong Song et al.             NLRP3 Inflammasome Modulates Post-Burn Lipolysis and Hepatic Fat Infiltration via Fatty Acid Synthase ▶     Roohi Vinaik, Mile Stanojcic, Marc G. Jeschke             Genetic interactions between ABA signalling and the Arg/N-end rule pathway during Arabidopsis seedling establishment ▶     Hongtao Zhang, Lucy Gannon, Peter D. Jones et al.             The Smallest Diplodocid Skull Reveals Cranial Ontogeny and Growth-Related Dietary Changes in the Largest Dinosaurs ▶     D. Cary Woodruff, Thomas D. Carr, Glenn W. Storrs et al.             Genome-wide association identifies methane production level relation to genetic control of digestive tract development in dairy cows ▶     M. Pszczola, T. Strabel, S. Mucha et al.             Spotlight on islands: on the origin and diversification of an ancient lineage of the Italian wall lizard Podarcis siculus in the western Pontine Islands ▶     Gabriele Senczuk, Katja Havenstein, Valentina Milana et al.             The effects of aquarium culture on coral oocyte ultrastructure ▶     Chiahsin Lin, Jian-Ming Zhuo, Gabriella Chong et al.             Increase in resistance to anticancer drugs involves occludin in spheroid culture model of lung adenocarcinoma A549 cells ▶     Hiroaki Eguchi, Risa Akizuki, Ryohei Maruhashi et al.             Attenuation of replication by a 29 nucleotide deletion in SARS-coronavirus acquired during the early stages of human-to-human transmission ▶     Doreen Muth, Victor Max Corman, Hanna Roth et al.             Exosomes from normal and diabetic human corneolimbal keratocytes differentially regulate migration, proliferation and marker expression of limbal epithelial cells ▶     Aleksandra Leszczynska, Mangesh Kulkarni, Alexander V. Ljubimov et al.             High fidelity CRISPR/Cas9 increases precise monoallelic and biallelic editing events in primordial germ cells ▶     Alewo Idoko-Akoh, Lorna Taylor, Helen M. Sang et al.             Short-term effect of Eucalyptus plantations on soil microbial communities and soil-atmosphere methane and nitrous oxide exchange ▶     Caroline A. Cuer, Renato de A. R. Rodrigues, Fabiano C. Balieiro et al.             Placental FKBP51 mediates a link between second trimester maternal anxiety and birthweight in female infants ▶     Katie L. Togher, Gerard W. O'Keeffe, Ali S. Khashan et al.             Transcriptome analysis of the genes regulating phytohormone and cellular patterning in Lagerstroemia plant architecture ▶     Yiqian Ju, Lu Feng, Jiyang Wu et al.             Detection of the carbapenemase gene bla VIM-5 in members of the Pseudomonas putida group isolated from polluted Nigerian wetlands ▶     Olawale O. Adelowo, John Vollmers, Ines Mäusezahl et al.             The interplay between adipose-derived stem cells and bladder cancer cells ▶     Malgorzata Maj, Anna Kokocha, Anna Bajek et al.             The effect of breastmilk and saliva combinations on the in vitro growth of oral pathogenic and commensal microorganisms ▶     E. L. Sweeney, S. S. Al-Shehri, D. M. Cowley et al.             Anodal transcranial direct current stimulation prevents methyl-4-phenyl-1,2,3,6-tetrahydropyridine (MPTP)-induced neurotoxicity by modulating autophagy in an in vivo mouse model of Parkinson's disease ▶     Sang-Bin Lee, Hee-Tae Kim, Hyun Ok Yang et al.             An extracellular [NiFe] hydrogenase mediating iron corrosion is encoded in a genetically unstable genomic island in Methanococcus maripaludis ▶     Hirohito Tsurumaru, Naofumi Ito, Koji Mori et al.             PAR-1 is a novel mechano-sensor transducing laminar flow-mediated endothelial signaling ▶     Suji Kim, Jung-Hwa Han, Dae-Hwan Nam et al.             Glutamate alleviates intestinal injury, maintains mTOR and suppresses TLR4 and NOD signaling pathways in weanling pigs challenged with lipopolysaccharide ▶     Qin Qin, Xiao Xu, Xiuying Wang et al.             Landscape of alternative splicing in Capra_hircus ▶     Tieshan Xu, Feng Xu, Lihong Gu et al.             Global pentapeptide statistics are far away from expected distributions ▶     Jarosław Poznański, Jan Topiński, Anna Muszewska et al.             Development of lentiviral vectors for efficient glutamatergic-selective gene expression in cultured hippocampal neurons ▶     Yoshihiro Egashira, Yasunori Mori, Yuchio Yanagawa et al.             Induction of the viable but non-culturable state in bacterial pathogens by household cleaners and inorganic salts ▶     Christian Robben, Susanne Fister, Anna Kristina Witte et al.             A break in parental interaction does not affect the temporal dependency of infant social engagement, but disrupts non-social engagement ▶     Whitney I. Mattson, Daniel S. Messinger, Devon N. Gangi et al.             Effects of Thymoquinone on radiation enteritis in mice ▶     Qinlian Hou, Linlin Liu, Yinping Dong et al.             Robust Enhancement of Lentivirus Production by Promoter Activation ▶     Naoto Suzuki, Takeshi Yoshida, Hiroaki Takeuchi et al.             Insight into the draft whole-genome sequence of the dermatophyte Arthroderma vanbreuseghemii ▶     Mohamed Mahdi Alshahni, Tsuyoshi Yamada, Ayaka Yo et al.             Floristic diversity in different urban ecological niches of a southern European city ▶     Mirko Salinitro, Alessandro Alessandrini, Alessandro Zappi et al.             Characterizing the protective effects of SHLP2, a mitochondrial-derived peptide, in macular degeneration ▶     Sonali Nashine, Pinchas Cohen, Anthony B. Nesburn et al.             Gravity-dependent change in the 'light-from-above' prior ▶     Michael Barnett-Cowan, Marc O. Ernst, Heinrich H. Bülthoff             Hydroxyurea Treated β-Thalassemia Children Demonstrate a Shift in Metabolism Towards Healthy Pattern ▶     Ayesha Iqbal, Saqib Hussain Ansari, Sadia Parveen et al.             2.0 Å resolution crystal structure of human polκ reveals a new catalytic function of N-clasp in DNA replication ▶     Vikash Jha, Hong Ling             Effects of aspirin-loaded graphene oxide coating of a titanium surface on proliferation and osteogenic differentiation of MC3T3-E1 cells ▶     Liping Ren, Shuang Pan, Haiqing Li et al.             Extremely low genetic diversity in a circumpolar dragonfly species, Somatochlora sahlbergi (Insecta: Odonata: Anisoptera) ▶     Manpreet K. Kohli, Göran Sahlén, William R. Kuhn et al.             Dendritic processing of spontaneous neuronal sequences for single-trial learning ▶     Tatsuya Haga, Tomoki Fukai             No Reliable Evidence for a Neanderthal-Châtelperronian Association at La Roche-à-Pierrot, Saint-Césaire ▶     Brad Gravina, François Bachellerie, Solène Caux et al.             Sodium tanshinone IIA sulfonate protects ARPE-19 cells against oxidative stress by inhibiting autophagy and apoptosis ▶     Dongmei Han, Xingwei Wu, Libin Liu et al.             Engineering a branching sucrase for flavonoid glucoside diversification ▶     Yannick Malbert, Claire Moulis, Yoann Brison et al.             Physiological changes for drought resistance in different species of Phyllanthus ▶     Elenilson G. Alves Filho, Luiza N. Braga, Lorena Mara A. Silva et al.             Heat-stress triggers MAPK crosstalk to turn on the hyperosmotic response pathway ▶     Paula Dunayevich, Rodrigo Baltanás, José Antonio Clemente et al.             Stressful conditions reveal decrease in size, modification of shape but relatively stable asymmetry in bumblebee wings ▶     Maxence Gerard, Denis Michez, Vincent Debat et al.             Single molecule localization microscopy coupled with touch preparation for the quantification of trastuzumab-bound HER2 ▶     Steven J. Tobin, Devin L. Wakefield, Veronica Jones et al.             Antibiotic export by efflux pumps affects growth of neighboring bacteria ▶     Xi Wen, Ariel M. Langevin, Mary J. Dunlop             Abscisic and Jasmonic Acids Contribute to Soybean Tolerance to the Soybean Aphid (Aphis glycines Matsumura) ▶     Kaitlin M. Chapman, Lia Marchi-Werle, Thomas E. Hunt et al.             Food predictability and social status drive individual resource specializations in a territorial vulture ▶     Thijs van Overveld, Marina García-Alfonso, Niels J. Dingemanse et al.             Quinoxaline protects zebrafish lateral line hair cells from cisplatin and aminoglycosides damage ▶     Sonia M. Rocha Sanchez, Olivia Fuson, Shikha Tarang et al.             Selective interactions between diverse STEs organize the ANT-C Hox cluster ▶     Mo Li, Zhibo Ma, Sharmila Roy et al.             MiR-494-3p regulates mitochondrial biogenesis and thermogenesis through PGC1-α signalling in beige adipocytes ▶     Mengistu Lemecha, Katsutaro Morino, Takeshi Imamura et al.             The impact of frequent napping and nap practice on sleep-dependent memory in humans ▶     Elizabeth A. McDevitt, Negin Sattari, Katherine A. Duggan et al.             First evidence for a possible invasional meltdown among invasive fish parasites ▶     M. A. A. Hohenadler, K. I. Honka, S. Emde et al.             Oxaliplatin induces pH acidification in dorsal root ganglia neurons ▶     Beatrice Riva, Marianna Dionisi, Alberto Potenzieri et al.             Deciphering molecular details in the assembly of alpha-type carboxysome ▶     Yilan Liu, Xinyuan He, Weiping Lim et al.             Lying down frequency as a discomfort index in heat stressed Holstein bull calves ▶     Levente Kovács, Fruzsina L. Kézér, Mikolt Bakony et al.             TRSP is dispensable for the Plasmodium pre-erythrocytic phase ▶     David Mendes Costa, Mónica Sá, Ana Rafaela Teixeira et al.             Marine microalgae commercial production improves sustainability of global fisheries and aquaculture ▶     Colin M. Beal, Léda N. Gerber, Supis Thongrod et al.             Glucocorticoids Induce Stress Oncoproteins Associated with Therapy-Resistance in African American and European American Prostate Cancer Cells ▶     Leanne Woods-Burnham, Christina K. Cajigas-Du Ross, Arthur Love et al.             Non-invasive imaging of disrupted protein homeostasis induced by proteasome inhibitor treatment using chemical exchange saturation transfer MRI ▶     Yanan Zhu, Rajiv Ramasawmy, Sean Peter Johnson et al.             GOGO: An improved algorithm to measure the semantic similarity between gene ontology terms ▶     Chenguang Zhao, Zheng Wang             Gut microbiome modulation during treatment of mucositis with the dairy bacterium Lactococcus lactis and recombinant strain secreting human antimicrobial PAP ▶     Rodrigo Carvalho, Aline Vaz, Felipe Luiz Pereira et al.             Mechanisms Underlying the Regulation of HP1γ by the NGF-PKA Signaling Pathway ▶     Seungmae Seo, Angela Mathison, Adrienne Grzenda et al.             The role of acetyltransferases for the temporal-specific accessibility of β-catenin to the myogenic gene locus ▶     Akiko Suzuki, Ryohei Minamide, Junichi Iwata             Tolloid-like 1 genetic variants determine fibrosis regression in chronic hepatitis C patients with curative antivirals ▶     Chung-Feng Huang, Ming-Lun Yeh, Ching-I Huang et al.             Pro-opiomelanocortin and its Processing Enzymes Associate with Plaque Stability in Human Atherosclerosis – Tampere Vascular Study ▶     Petteri Rinne, Leo-Pekka Lyytikäinen, Emma Raitoharju et al.             Hesperidin and capsaicin, but not the combination, prevent hepatic steatosis and other metabolic syndrome-related alterations in western diet-fed rats ▶     Andrea Mosqueda-Solís, Juana Sánchez, Bárbara Reynés et al.             Genome-wide expression profiling of glioblastoma using a large combined cohort ▶     Jing Tang, Dian He, Pingrong Yang et al.             First passage events in biological systems with non-exponential inter-event times ▶     Mario Castro, Martín López-García, Grant Lythe et al.             Structural Analysis of an Epitope Candidate of Triosephosphate Isomerase in Opisthorchis viverrini ▶     Jonghyeon Son, Sulhee Kim, So Eun Kim et al.             MiR-323b-5p acts as a novel diagnostic biomarker for critical limb ischemia in type 2 diabetic patients ▶     Biao Cheng, Ju-yi Li, Xiao-chao Li et al.             13C Pyruvate Transport Across the Blood-Brain Barrier in Preclinical Hyperpolarised MRI ▶     Jack J. Miller, James T. Grist, Sébastien Serres et al.             Spatio-temporal dynamics and aetiology of proliferative leg skin lesions in wild British finches ▶     Becki Lawson, Robert A. Robinson, Julia Rodriguez-Ramos Fernandez et al.             Changing characteristics of the empathic communication network after empathy-enhancement program for medical students ▶     Je-Yeon Yun, Kyoung Hee Kim, Geum Jae Joo et al.             Expression analysis of Cell wall invertase under abiotic stress conditions influencing specialized metabolism in Catharanthus roseus ▶     M. J. Nishanth, S. A. Sheshadri, Sudarshan Singh Rathore et al.             CX3CR1 differentiates F4/80low monocytes into pro-inflammatory F4/80high macrophages in the liver ▶     Young-Sun Lee, Myung-Ho Kim, Hyon-Seung Yi et al.             Intravesical Mycobacterium brumae triggers both local and systemic immunotherapeutic responses against bladder cancer in mice ▶     Estela Noguera-Ortega, Rosa M. Rabanal, Elisabet Gómez-Mora et al.             Changes in brain arousal (EEG-vigilance) after therapeutic sleep deprivation in depressive patients and healthy controls ▶     Christian Sander, Jonathan M. Schmidt, Roland Mergl et al.             Distinguishing Ewing sarcoma and osteomyelitis using FTIR spectroscopy ▶     Radosław Chaber, Christopher J. Arthur, Joanna Depciuch et al.             A generalised framework for detailed classification of swimming paths inside the Morris Water Maze ▶     Avgoustinos Vouros, Tiago V. Gehring, Kinga Szydlowska et al.             Volatiles from Aquilaria sinensis damaged by Heortia vitessoides larvae deter the conspecific gravid adults and attract its predator Cantheconidea concinna ▶     Haili Qiao, Pengfei Lu, Sai Liu et al.             Graphene Oxide-Gold Nanosheets Containing Chitosan Scaffold Improves Ventricular Contractility and Function After Implantation into Infarcted Heart ▶     Sekaran Saravanan, Niketa Sareen, Ejlal Abu-El-Rub et al.             Current noninvasive liver reserve models do not predict histological fibrosis severity in hepatocellular carcinoma ▶     Shu-Yein Ho, Po-Hong Liu, Chia-Yang Hsu et al.             In silico-prediction of protein–protein interactions network about MAPKs and PP2Cs reveals a novel docking site variants in Brachypodium distachyon ▶     Min Jiang, Chao Niu, Jianmei Cao et al.                 • Scientific Reports events Directory featured events           natureevents directory featured events         Cold Spring Harbor Asia Conference on Single Cell     05.11.18 Suzhou, China         Natureevents Directory 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