Wednesday, November 16, 2016

Nature contents: 17 November 2016

If you are unable to see the message below, click here to view.

 
  journal cover  
Nature Volume 539 Issue 7629
 
This Week  
 
 
Editorials  
 
 
 
Reality must trump rhetoric after US election shock
It is time for scientists and politicians alike to constructively engage with core issues — from climate change and energy independence to social inequality.
Being able to explain your work to passers-by is laudable — but not always possible
The first person to invoke the ‘man on the street’ has been identified, but sometimes maths is just to difficult to make simple.
Fed up of Earth? Try Mars
Establishing a Martian outpost is likely to bring many of the same societal problems we face on Earth.
 
Advertising.
World View  
 
 
 
Science and innovation policies for Donald Trump
Daniel Sarewitz says the new US president will need to promote creative science to benefit the disaffected millions who voted for him.
 
Seven Days  
 
 
 
SEVEN DAYS
The week in science: 11–17 November 2016
Research Highlights  
 
 
 
Animal behaviour: Plastic smells good to marine birds | Photonics: Nanolasers for precision imaging | Geochemistry: Plants take up more carbon | Cancer immunotherapy: Gene-edited cells fight cancer | Neuroscience: Brain circuit for tickling found | Cardiovascular biology: Food chemical protects the heart | Materials: Elastic polymer mimics muscles | Infection: Red squirrels get leprosy | Palaeontology: Early dinosaurs emerged gradually | Archaeology: Old DNA reveals fishing habits
 
 
 
Ready to see a glimpse of tomorrow?

Visit KAUST Discovery today

KAUST Discovery highlights the cutting-edge research, technologies and innovations emerging from the King Abdullah University of Science and Technology. From biotechnology, to solar, to materials and marine science: KAUST is working on it.
 
 
News in Focus
 
The ultimate experiment: How Trump will handle science
Climate-change and immigration policies raise alarm, but much of the incoming US president's agenda is simply unknown.
Sara Reardon, Jeff Tollefson, Alexandra Witze et al.
  Pollsters struggle to explain failures of US presidential forecasts
Most surveys did not predict Donald Trump’s victory over Hillary Clinton.
Ramin Skibba
Disgraced stem-cell entrepreneur under fresh investigation
Davide Vannoni is barred from offering a controversial stem-cell therapy in Italy but may be continuing his work abroad.
Alison Abbott
  I can haz more science emoji? Host of nerd icons proposed
At a conference in San Francisco, a group drafted proposals to add more planets, instruments and other science icons to the keyboard.
Katherine Bourzac
Rwanda feels the pinch as donors slash health aid
Country's progress on public health and science prompts funding shift to more-troubled nations.
Erika Check Hayden
  Open peer review finds more takers
Journal experiments and surveys suggest scientists are coming round to the idea of publishing review reports.
Ewen Callaway
Features  
 
 
 
A hostile ocean is delaying global warming, but that might not last
The waters of the Southern Ocean have absorbed much of the excess heat and carbon generated by humanity.
Jeff Tollefson
Multimedia  
 
 
Nature Podcast: 17 November 2016
This week, your brain on cannabis, testing CRISPR in a human, and what it might be like to live on Mars.
 
 
Advertising.
 
 
Comment
 
Carbon is not the enemy
Design with the natural cycle in mind to ensure that carbon ends up in the right places, urges William McDonough
William McDonough
Books and Arts  
 
 
 
Public health: Gore and glory
David Dobbs extols a history of New York's Bellevue hospital, a crucible of discovery in medicine.
David Dobbs
Books in brief
Barbara Kiser reviews five of the week's best science picks.
Barbara Kiser
History: Untangling Alice
Gillian Beer reveals the currents in Lewis Carroll's worlds.
Gillian Beer
Correspondence  
 
 
 
UK research reform: protest now
Stephen Curry, Jenny Rohn, Andrew Steele
  UK research reform: poor timing
Martin Rees
UK research reform: get the facts straight
Leszek K. Borysiewicz
  Community genetics: Genetics boosts US–Cuban links
Rosario Isasi, Stephan L. Zuchner, Roberto Cañete Villafranca
Molecular medicine: Precision oncology is not an illusion
Edward Abrahams, Stephen L. Eck
 
Obituary  
 
 
 
Joseph L. Birman (1927–2016)
Physicist who helped hundreds of scientists to escape oppression.
Eugene M. Chudnovsky
 
 
Specials
 
NATURE INDEX  
 
 
 
Nature Index 2016 Collaborations
Nicky Phillips
How they stack up
From all corners of the globe, researchers across the disciplines are teaming up to tackle the big questions in science. The United States is a particularly significant contributor in its partnerships.
Larissa Kogleck
Science superpowers find common ground
Chinese–US research partnerships outnumber all other international pairings. That trend, spurred by a long history of collaboration between the two countries, presents challenges, but the outcomes are a major boon for science.
Sujata Gupta
Old bonds and elemental connections
Researchers in Paris and Tokyo are connected, but the two capitals have quite different patterns of collaboration.
Tim Hornyak, Barbara Casassus
Applying local knowledge
Proximity is just one factor driving the high number of collaborations between top performing institutions in the same city.
Neil Savage
Closing the channel of opportunity
Uncertainty surrounding Britain's future in EU research could be as damaging to science as the prospect of funding cuts once it leaves the union.
Mark Peplow
Nature Index 2016 Collaborations tables
A guide to the Nature Index
A description of the terminology and methodology used in this supplement, and a guide to the functionality available free online at natureindex.com.
 
 
Research
 
NEW ONLINE  
 
 
 
DNA repair: Clamping down on copy errors
Repair enzymes must communicate across hundreds of nucleotides to undo errors made during DNA replication. Imaging reveals that the enzymes do this by forming a series of ring-like clamps that diffuse along the DNA.
Materials science: Improving the image of nanoparticles
A biocompatible probe that combines fluorescent nanodiamonds and gold nanoparticles allows cells to be imaged using both optical and electron microscopy techniques, opening up fresh opportunities for biological research.
Quantum computing: Efficient fault tolerance
Dealing with errors in a quantum computer typically requires complex programming and many additional quantum bits. A technique for controlling errors has been proposed that alleviates both of these problems.
The pathway to GTPase activation of elongation factor SelB on the ribosome
The structures of several states on the pathway of SelB-mediated delivery of selenocysteine-specific tRNA to the ribosome in Escherichia coli reveal the mechanism of UGA stop codon recoding to selenocysteine and show how codon recognition triggers activation of translational GTPases.
Dynamics of a seafloor-spreading episode at the East Pacific Rise
Seismic observations clarify the roles of magma pressure and tectonic stress in the development of seafloor spreading during the most recent eruption at the East Pacific Rise.
Reorientation and faulting of Pluto due to volatile loading within Sputnik Planitia
The location of Sputnik Planitia on Pluto is shown to result from volatiles sequestered within the basin forcing the reorientation of the dwarf planet, as supported by the planet-wide fault network.
Reorientation of Sputnik Planitia implies a subsurface ocean on Pluto
To explain the position of the Sputnik Planitia basin on Pluto, the feature would need to have formed via impact and Pluto would need to have a subsurface ocean.
An oxidative N-demethylase reveals PAS transition from ubiquitous sensor to enzyme
Characterization of the first Per-ARNT-Sim enzyme, a haem-dependent oxidative N-demethylase.
Genetic and mechanistic diversity of piRNA 3′-end formation
Drosophila have two pathways for PIWI-interacting RNA (piRNA) 3′-end formation—depending on which pathway is used, piRNA biogenesis is directed towards either cytoplasmic or nuclear PIWI protein effectors, which balances post-transcriptional versus transcriptional transposon silencing.
Designer matrices for intestinal stem cell and organoid culture
The authors have designed modular synthetic hydrogel networks for mouse and human intestinal stem cell cultures that support intestinal organoid formation.
Structure of RNA polymerase I transcribing ribosomal DNA genes
Structures of budding yeast RNA polymerase I in a catalytically active conformation are presented and confirmed by visualizing processive transcription along ribosomal DNA genes; they support a general model for transcription elongation in which contracted and expanded polymerase conformations are associated with active and inactive states, respectively.
Cascading MutS and MutL sliding clamps control DNA diffusion to activate mismatch repair
MutS and MutL—the highly conserved core proteins responsible for the repair of mismatched DNA—form sequential stable sliding clamps that together modulate one-dimensional diffusion along the DNA and, with MutH, facilitate the search for a distant excision initiation site.
In vivo genome editing via CRISPR/Cas9 mediated homology-independent targeted integration
A method for CRISPR-based genome editing that harnesses cellular non-homologous end joining activity to achieve targeted DNA knock-in in non-dividing tissues.
Structures of riboswitch RNA reaction states by mix-and-inject XFEL serial crystallography
Erratum: A renewed model of pancreatic cancer evolution based on genomic rearrangement patterns
News and Views  
 
 
 
Molecular biology: Mature proteins braced by a chaperone
Qinglian Liu, Elizabeth A. Craig
Optical physics: Clear directions for random lasers
Diederik S. Wiersma
Geochemistry: Ions surprise in Earth's deep fluids
David Dolejš
 


Maximize culture quality and minimize daily feeding.

StemBeads® are developed and tested by scientists who understand the complexity of cells and the importance of high quality reagents.
 
-Reduce Spontaneous Differentiation and Cell Death
-Improve Culture Quality
-Use your Favorite Media
-Media savings of up to 67%
-Save Time and Money
 
Watch our video and learn more
Neuroscience: Sleepy and dreamless mutant mice
Derk-Jan Dijk, Raphaëlle Winsky-Sommerer
 
Materials science: Semiconductors that stretch and heal
Siegfried Bauer, Martin Kaltenbrunner
50 & 100 Years Ago
 
Microbiology: Deep-sea secrets of butane metabolism
Stephen W. Ragsdale
Reviews  
 
 
 
The effects of Δ9-tetrahydrocannabinol on the dopamine system
A review into the complex effects of Δ9-tetrahydrocannabinol on the dopamine system, examining data from animal and human studies and discussing the necessary future direction of research.
Michael A. P. Bloomfield, Abhishekh H. Ashok, Nora D. Volkow et al.
Articles  
 
 
 
CRISPR/Cas9 β-globin gene targeting in human haematopoietic stem cells
These preclinical studies outline a CRISPR-based methodology for correcting β-globin gene mutations in haematopoietic stem cells to advance the development of next-generation therapies for β-haemoglobinopathies.
Daniel P. Dever, Rasmus O. Bak, Andreas Reinisch et al.
Forward-genetics analysis of sleep in randomly mutagenized mice
Two mutations affecting the sleep–wakefulness balance in mice are detected, showing that the SIK3 protein kinase is essential for determining daily wake time, and the NALCN cation channel regulates the duration of rapid eye movement sleep.
Hiromasa Funato, Chika Miyoshi, Tomoyuki Fujiyama et al.
LKB1 loss links serine metabolism to DNA methylation and tumorigenesis
Human tumours with mutations in LKB1 and Kras have a specific hypermetabolic state associated with increased DNA methylation, pointing to potential metabolic and epigenetic vulnerabilities of specific tumours.
Filippos Kottakis, Brandon N. Nicolay, Ahlima Roumane et al.
Thermophilic archaea activate butane via alkyl-coenzyme M formation
Anaerobic archaea enriched in thermophilic microbial consortia completely degrade butane by modifying mechanisms which were hitherto thought to be specific to methane metabolism.
Rafael Laso-Pérez, Gunter Wegener, Katrin Knittel et al.
Letters  
 
 
 
Overcoming resistance to checkpoint blockade therapy by targeting PI3Kγ in myeloid cells
Targeting tumour-infiltrating suppressive myeloid cells with a selective PI3Kγ inhibitor overcomes resistance to checkpoint blockade therapy in various mouse myeloid-rich tumour models.
Olivier De Henau, Matthew Rausch, David Winkler et al.
Tidal evolution of the Moon from a high-obliquity, high-angular-momentum Earth
A model of the Moon’s tidal evolution, starting from the fast-spinning, high-obliquity Earth that would be expected after a giant impact, reveals that solar perturbations on the Moon’s orbit naturally produce the current lunar inclination and Earth’s low obliquity.
Matija Ćuk, Douglas P. Hamilton, Simon J. Lock et al.
Nanoscale thermal imaging of dissipation in quantum systems
A cryogenic thermal imaging technique that uses a superconducting quantum interference device fabricated on the tip of a sharp pipette can be used to image the thermal signature of extremely low power nanometre-scale dissipation processes.
D. Halbertal, J. Cuppens, M. Ben Shalom et al.
Implications for metal and volatile cycles from the pH of subduction zone fluids
A thermodynamic model of fluid pH and its variability in Earth’s mantle and subducting crust highlights chemical feedbacks that connect deep Earth to surface processes.
Matthieu E. Galvez, James A. D. Connolly, Craig E. Manning
Variability in plant nutrients reduces insect herbivore performance
Variation in plant nutrient levels suppresses insect herbivore populations and the homogenous nutrient content of modern agricultural crops could be contributing to insect pest outbreaks.
William C. Wetzel, Heather M. Kharouba, Moria Robinson et al.
Alternative modes of client binding enable functional plasticity of Hsp70
Hsp70 binds unfolded protein segments in its groove, but can also bind and stabilize folded protein structures, owing to its moveable lid, with ATP hydrolysis and co-chaperones allowing control of these contrasting effects.
Alireza Mashaghi, Sergey Bezrukavnikov, David P. Minde et al.
Local regulation of gene expression by lncRNA promoters, transcription and splicing
Various cis-regulatory functions of genomic loci that produce long non-coding RNAs are revealed, including instances where their promoters have enhancer-like activity and the lncRNA transcripts themselves are not required for activity.
Jesse M. Engreitz, Jenna E. Haines, Elizabeth M. Perez et al.
Amazon boundary layer aerosol concentration sustained by vertical transport during rainfall
Rapid vertical transport of small aerosol particles from the free troposphere to the atmospheric boundary layer occurs during precipitation and maintains the population of aerosol particles over Amazonia.
Jian Wang, Radovan Krejci, Scott Giangrande et al.
Neuromodulators signal through astrocytes to alter neural circuit activity and behaviour
Calcium signalling in astrocytes, driven through the octopamine/tyramine receptor and the TRP channel Water witch, is essential for neuromodulation and sensory responses in Drosophila larvae.
Zhiguo Ma, Tobias Stork, Dwight E. Bergles et al.
Transcription of the non-coding RNA upperhand controls Hand2 expression and heart development
Transcription of a long non-coding RNA, known as upperhand (Uph) located upstream of the HAND2 transcription factor is required to maintain transcription of the Hand2 gene by RNA polymerase, and blockade of Uph expression leads to heart defects and embryonic lethality in mice.
Kelly M. Anderson, Douglas M. Anderson, John R. McAnally et al.
Intrinsically stretchable and healable semiconducting polymer for organic transistors
Introducing non-covalent crosslinking moieties to polymer semiconductors produces a stretchable and healable material suitable for wearable electronics.
Jin Young Oh, Simon Rondeau-Gagné, Yu-Cheng Chiu et al.
PI3Kγ is a molecular switch that controls immune suppression
Modulation of PI3Kγ activity regulates macrophage polarization during inflammation and cancer, whilst combining PI3Kγ inhibition with immune checkpoint inhibitors leads to synergistic tumour-inhibitory effects.
Megan M. Kaneda, Karen S. Messer, Natacha Ralainirina et al.
Corrigenda  
 
 
 
Corrigendum: An essential receptor for adeno-associated virus infection
S. Pillay, N. L. Meyer, A. S. Puschnik et al.
Corrigendum: An early geodynamo driven by exsolution of mantle components from Earth’s core
James Badro, Julien Siebert, Francis Nimmo
Errata  
 
 
 
Erratum: Replication fork stability confers chemoresistance in BRCA-deficient cells
Arnab Ray Chaudhuri, Elsa Callen, Xia Ding et al.
 
 


Nature Reviews Chemistry - Stay Informed

The second physical sciences title in the Nature Reviews portfolio, Nature Reviews Chemistry aims to build on the success of Nature Chemistry and emulate the principles of authoritative, high-quality content and exceptional editorial standards that are the hallmark of the Nature Reviews titles. Register for the Nature Reviews Chemistry e-alert and stay informed about the latest news and research in topics covering the breadth of pure and applied chemistry.

Sign up for the e-alert
 
 
Careers & Jobs
 
Feature  
 
 
 
Education: The gamble of a PhD hiatus
Eryn Brown
Q&AS  
 
 
 
Trade talk: Industrial shift
Monya Baker
Futures  
 
 
Box 27
A question of definition.
Kevin Lauderdale
 
 
 
 
 

naturejobs.com

naturejobs.com Science jobs of the week

 
 
 

Research Associate

 
 

University of Cambridge 

 
 
 
 
 

Postdoctoral Research Fellow

 
 

University of Edinburgh 

 
 
 
 
 

Postdoctoral Fellow

 
 

University of California, San Diego (UCSD) 

 
 
 
 
 

Postdoctoral Associate

 
 

Yale University School of Medicine 

 
 
 
 

No matter what your career stage, student, postdoc or senior scientist, you will find articles on naturejobs.com to help guide you in your science career. Keep up-to-date with the latest sector trends, vote in our reader poll and sign-up to receive the monthly Naturejobs newsletter.

 
 
 
 
 
 
 

natureevents.com - The premier science events website

natureevents directory featured events

 
 
 
 

22nd Annual Multidisciplinary Symposium on Breast Disease

 
 

09.02.17 Gainesville, USA

 
 
 
 

Natureevents Directory is the premier resource for scientists looking for the latest scientific conferences, courses, meetings and symposia. Featured across Nature Publishing Group journals and centrally at natureevents.com it is an essential reference guide to scientific events worldwide.

 
 
 
 
 
Your email address is in the Nature mailing list.

You have been sent this Table of Contents Alert because you have opted in to receive it. You can change or discontinue your e-mail alerts at any time, by modifying your preferences on your nature.com account at: www.nature.com/nams/svc/myaccount (You will need to log in to be recognised as a nature.com registrant).
 
 
For further technical assistance, please contact our registration department at registration@nature.com

For print subscription enquiries, please contact our subscription department at subscriptions@nature.com

For other enquiries, please contact feedback@nature.com

Nature Research | One New York Plaza, Suite 4500 | New York | NY 10004-1562 | USA

Nature Research's offices:

Principal offices: London - New York - Tokyo

Worldwide offices: Basingstoke - Beijing - Boston - Buenos Aires - Delhi - Heidelberg - Hong Kong - Madrid - Melbourne - Munich - Paris - San Francisco - Seoul - Shanghai - Washington DC - Sydney

Macmillan Publishers Limited is a company incorporated in England and Wales under company number 785998 and whose registered office is located at The Campus, 4 Crinan Street, London, N1 9XW.

© 2016 Macmillan Publishers Limited. All Rights Reserved.
 

No comments: