Wednesday, November 9, 2016

Nature contents: 10 November 2016

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  journal cover  
Nature Volume 539 Issue 7628
 
This Week  
 
 
Editorials  
 
 
 
Don’t bypass Brazil’s environmental protections
Proposals to streamline infrastructure projects are headed in the wrong direction.
Judge science on merit, not assumptions
Prejudices about research in particular countries harms the openness required for successful international relationships.
Scientific language is becoming more informal
Biologists in particular are writing their papers in a less formal style.
 

 

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World View  
 
 
 
The insect crisis we can’t ignore
We must start an ambitious and professional global programme to explore and preserve invertebrate biodiversity, says Axel Hochkirch.
 
Seven Days  
 
 
 
Heavy smog, a huge ship and a smashing record
The week in science: 4–10 November 2016
Research Highlights  
 
 
 
Geophysics: Volcano sneaks in magma sideways | Metabolism: Fat-molecule drop boosts metabolism | Zoology: Thorny devil may drink from sand | Evolution: Cat DNA shaped by diet | Astroparticle physics: Cosmic rays make more muons | Plant biology: Plants transmit light down stems | Microbial evolution: Legionnaires' strains adapt well | Zoology: Old apes can't see up close | Fluid dynamics: Fluid spills from strange straws
 
 


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News in Focus
 
Political upheaval threatens Brazil’s environmental protections
Barrage of proposals would allow developers to sidestep environmental reviews.
Jeff Tollefson
  Brexit chancellor’s annual address is a science nail-biter
Government’s first Autumn Statement could reveal how it regards science.
Elizabeth Gibney
The quiet rise of the NIH’s hot new metric
Biomedical funders worldwide are adopting the US agency’s free Relative Citation Ratio to analyse grant outcomes.
Gautam Naik
  Big brain projects urged to aid public health
World Health Organization asks research initiatives to focus on translating their findings into clinical benefits.
Sara Reardon
Quest to map Africa’s soil microbiome begins
Sub-Saharan project could one day help ecosystems to resist climate change and improve agriculture.
Sarah Wild
  Tracker flags up failures to report clinical trials
Computerized search of trial registry lists worst offenders.
Heidi Ledford
Features  
 
 
 
How to defeat dementia
Three things are needed to turn the tide on the costliest crisis in health care.
Elie Dolgin
Multimedia  
 
 
Nature Podcast: 10 November 2016
This week, CERN for the brain, modelling the effects of a climate tax on food, and a brain-spine interface helps paralysed monkeys walk.
Correction  
 
 
Correction
 
 
 
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Comment
 
A better way to crack the brain
Focused grass-roots collaborations that start small and scale up could overcome technical and sociological barriers to 'big' neuroscience, argue Zachary F. Mainen, Michael Häusser and Alexandre Pouget.
Zachary F. Mainen, Michael Häusser, Alexandre Pouget
Forecast ocean variability
The IPCC should supply policymakers with realistic regional projections of how the seas will respond to warming, write Daniela Schmidt and Philip W. Boyd.
Daniela Schmidt, Philip W. Boyd
Books and Arts  
 
 
 
Neuroscience: Tide of forgetting
Michael Heneka applauds a sweeping survey of dementia that explores research, diagnosis and care.
Michael Heneka
Books in brief
Barbara Kiser reviews five of the week's best science picks.
Barbara Kiser
Correspondence  
 
 
 
Peer review: Revise rules on conflicts of interest
Indrė Žliobaitė, Mikael Fortelius
  Taxonomy: Preserve specimens for reproducibility
Frank T. Krell
Ranking lists: Open up research evaluation in China
Lihua Yang
  Environment: Australia too casual with protection law
Christian Vincenot, Sophie Petit
Energy resources: Renewables from the bottom up
Jari Lyytimäki
 
 
 
Specials
 
TECHNOLOGY FEATURE  
 
 
 
The real-time technicolour living brain
Neurobiologists are coming up with innovative ways to get high-resolution pictures of the whole brain at work.
Amber Dance
 
 
Research
 
NEW ONLINE  
 
 
 
Evolution: Insect invasions and natural selection
Observations of a real-time invasion of Australia by Asian honeybees demonstrate how natural selection can allow a small founding population to overcome the genetic odds stacked against success.
Cell biology: A mitochondrial brake on vascular repair
Injured blood vessels are repaired by vascular smooth-muscle cells. It emerges that the protein Fat1 regulates the proliferation of these cells by inhibiting the function of mitochondria.
Optical physics: Clear directions for random lasers
Random lasers use disordered structures to produce light, which is usually emitted in many directions. A random laser that can produce a collimated beam offers a wide range of applications, from imaging to security scanning.
CRISPR/Cas9 β-globin gene targeting in human haematopoietic stem cells
These preclinical studies outline a CRISPR-based methodology for correcting β-globin gene mutations in haematopoietic stem cells to advance the development of next-generation therapies for β-haemoglobinopathies.
Magnetic reversals from planetary dynamo waves
Polarity reversals caused by dynamo waves are demonstrated in a magnetohydrodynamic model that is relevant to planetary cores, suggesting a possible mechanism of geomagnetic reversals.
Broadening not strengthening of the Agulhas Current since the early 1990s
The Agulhas Current has not intensified since the early 1990s, but has instead broadened as a result of more eddy activity.
A cannabinoid link between mitochondria and memory
Cannabinoids affect CB1 receptors on the mitochondrial membranes in the brain, triggering a decrease in downstream cAMP-dependent signalling; this leads to a decrease in brain mitochondrial activity and to cannabinoid-induced amnesia.
Different tissue phagocytes sample apoptotic cells to direct distinct homeostasis programs
Apoptotic intestinal epithelial cells can be sampled by lamina propria phagocytes, leading to distinct phagocyte-type-specific anti-inflammatory gene signatures and dendritic-cell-mediated induction of regulatory T cells.
Macrophages redirect phagocytosis by non-professional phagocytes and influence inflammation
Macrophage-derived insulin-like growth factor enhances the uptake of microvesicles by non-professional phagocytes, such as airway epithelial cells and fibroblasts, thereby dampening tissue inflammation.
Neuromodulators signal through astrocytes to alter neural circuit activity and behaviour
Calcium signalling in astrocytes, driven through the octopamine/tyramine receptor and the TRP channel Water witch, is essential for neuromodulation and sensory responses in Drosophila larvae.
Control of mitochondrial function and cell growth by the atypical cadherin Fat1
Fragments of the atypical cadherin Fat1 accumulate in the mitochondria of vascular smooth muscle cells where they reduce respiration, leading to a regulated proliferative response to arterial injury.
Overcoming resistance to checkpoint blockade therapy by targeting PI3Kγ in myeloid cells
Targeting tumour-infiltrating suppressive myeloid cells with a selective PI3Kγ inhibitor overcomes resistance to checkpoint blockade therapy in various mouse myeloid-rich tumour models.
RIPK1 counteracts ZBP1-mediated necroptosis to inhibit inflammation
RIPK1 inhibits ZBP1-driven necroptosis during development.
Neutralizing human antibodies prevent Zika virus replication and fetal disease in mice
Ad26/MVA Therapeutic Vaccination with TLR7 Stimulation in SIV-Infected Rhesus Monkeys
Erratum: Kamakura replies
News and Views  
 
 
 
Nanoscience: Single-molecule instant replay
Nicholas Camillone III
In retrospect: Eighty years of stress
George Fink
Evolution: Genomic remodelling in the primate brain
Justine Kupferman, Franck Polleux
 
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Geoscience: Cliffs make a hasty retreat
Ryan Wilkinson
 
50 & 100 Years Ago
Cancer: Bad neighbours cause bad blood
Gordon Chan, Benjamin G. Neel
 
Atomic physics: A strange kind of liquid
Bruno Laburthe-Tolra
Spinal-cord injury: Neural interfaces take another step forward
Andrew Jackson
 
Insight  
 
 
 
Neurodegenerative diseases
Marie-Thérèse Heemels
Ageing, neurodegeneration and brain rejuvenation
Tony Wyss-Coray
The road to restoring neural circuits for the treatment of Alzheimer's disease
Rebecca G. Canter, Jay Penney, Li-Huei Tsai
Decoding ALS: from genes to mechanism
J. Paul Taylor, Robert H. Brown Jr, Don W. Cleveland
Defects in trafficking bridge Parkinson's disease pathology and genetics
Asa Abeliovich, Aaron D. Gitler
Mammalian prions and their wider relevance in neurodegenerative diseases
John Collinge
The activities of amyloids from a structural perspective
Roland Riek, David S. Eisenberg
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Articles  
 
 
 
The stem osteichthyan Andreolepis and the origin of tooth replacement
The extinct Andreolepis, an early fish that is close to the common ancestor of all bony fish and land vertebrates, shed its teeth by basal resportion—the earliest example of this mode of tooth replacement.
Donglei Chen, Henning Blom, Sophie Sanchez et al.
Evolution of Osteocrin as an activity-regulated factor in the primate brain
Osteocrin is a non-neuronal secreted protein in mice that has been evolutionarily repurposed to act as a neuronal development factor in primates.
Bulent Ataman, Gabriella L. Boulting, David A. Harmin et al.
Transplanted embryonic neurons integrate into adult neocortical circuits
Transplanted embryonic neurons in mice mature and achieve adult-like properties within 4–8 weeks, receiving appropriate inputs and establishing stimulus-selective responses.
Susanne Falkner, Sofia Grade, Leda Dimou et al.
Balancing selection shapes density-dependent foraging behaviour
Natural isolates of Caenorhabditis elegans nematodes differ in their sensitivity to the anti-exploratory pheromone icas#9, yielding two distinct foraging strategies that possess different survival advantages depending on environmental conditions such as food distribution.
Joshua S. Greene, Maximillian Brown, May Dobosiewicz et al.
Letters  
 
 
 
Self-bound droplets of a dilute magnetic quantum liquid
A self-bound quantum droplet of magnetic atoms is observed in a trap-free levitation field.
Matthias Schmitt, Matthias Wenzel, Fabian Böttcher et al.
Tracking the ultrafast motion of a single molecule by femtosecond orbital imaging
Watching a single molecule move calls for measurements that combine ultrafast temporal resolution with atomic spatial resolution; this is now shown to be possible by combining scanning tunnelling microscopy with lightwave electronics, through a technique that involves removing a single electron from the highest occupied orbital of a single pentacene molecule in a time window shorter than an oscillation cycle of light.
Tyler L. Cocker, Dominik Peller, Ping Yu et al.
Catalytic alkylation of remote C–H bonds enabled by proton-coupled electron transfer
Catalytic alkylation of C–H bonds is achieved via homolysis of N–H bonds of N-alkyl amides through proton-coupled electron transfer.
Gilbert J. Choi, Qilei Zhu, David C. Miller et al.
Fluvial sediment supply to a mega-delta reduced by shifting tropical-cyclone activity
About a third of the sediment delivery of the Mekong River is shown to be associated with rainfall generated by tropical cyclones, suggesting that future delta stability will be strongly moderated by changes to tropical cyclone intensity, frequency and track.
Stephen E. Darby, Christopher R. Hackney, Julian Leyland et al.
Amide-directed photoredox-catalysed C–C bond formation at unactivated sp3 C–H bonds
The formation of carbon–carbon bonds is achieved via directed cleavage of traditionally non-reactive carbon–hydrogen bonds and their subsequent coupling with readily available alkenes.
John C. K. Chu, Tomislav Rovis
Cultural innovation and megafauna interaction in the early settlement of arid Australia
Warratyi rock shelter shows evidence of human occupation approximately 50,000 years ago, development of tool use and cultural innovation, and interaction with now-extinct megafauna in arid Australia.
Giles Hamm, Peter Mitchell, Lee J. Arnold et al.
A brain–spine interface alleviating gait deficits after spinal cord injury in primates
A wireless brain–spine interface is presented that enables macaques with a spinal cord injury to regain locomotor movements of a paralysed leg.
Marco Capogrosso, Tomislav Milekovic, David Borton et al.
A basal ganglia circuit for evaluating action outcomes
In mice, glutamatergic globus pallidus neurons projecting to the lateral habenula (GPh neurons) bi-directionally encode positive and negative prediction error signals that are critical for outcome evaluation and are driven by a subset of basal ganglia circuits.
Marcus Stephenson-Jones, Kai Yu, Sandra Ahrens et al.
Fatty acid synthesis configures the plasma membrane for inflammation in diabetes
Mice with macrophages deficient in fatty acid synthase exhibit lower levels of diabetes-related insulin resistance and inflammation, qualities that are restored on addition of exogenous cholesterol.
Xiaochao Wei, Haowei Song, Li Yin et al.
Reconstitution in vitro of the entire cycle of the mouse female germ line
Using a protocol that recapitulates both meiosis and oocyte growth in vitro, the authors induce mouse pluripotent stem cells to differentiate into fully functional oocytes that can be fertilized and generate viable offspring, thereby recapitulating the full mammalian female germline cycle in a dish.
Orie Hikabe, Nobuhiko Hamazaki, Go Nagamatsu et al.
Leukaemogenic effects of Ptpn11 activating mutations in the stem cell microenvironment
Mutations in the protein tyrosine phosphatase SHP2 affect cells in the bone marrow environment, which leads to aberrant activation of resident haematopoietic stem cells and thereby contributes to the development of leukaemia.
Lei Dong, Wen-Mei Yu, Hong Zheng et al.
Single-cell RNA-seq supports a developmental hierarchy in human oligodendroglioma
Single-cell RNA-seq in human gliomas identifies cycling cancer stem cells and their differentiated glial-like cell progeny.
Itay Tirosh, Andrew S. Venteicher, Christine Hebert et al.
Corrigenda  
 
 
 
Corrigendum: Human commensals producing a novel antibiotic impair pathogen colonization
Alexander Zipperer, Martin C. Konnerth, Claudia Laux et al.
Corrigendum: Age-dependent modulation of vascular niches for haematopoietic stem cells
Anjali P. Kusumbe, Saravana K. Ramasamy, Tomer Itkin et al.
Errata  
 
 
 
Erratum: Structural basis of potent Zika–dengue virus antibody cross-neutralization
Giovanna Barba-Spaeth, Wanwisa Dejnirattisai, Alexander Rouvinski et al.
 
 


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Careers & Jobs
 
Feature  
 
 
 
Mental health: Caught in a trap
Emily Sohn
Career Briefs  
 
 
 
Europe: Call to keep funding
Policy: Minorities programme
Futures  
 
 
Melissa
Lost time.
Troy Stieglitz
 
 
 
 
 

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