The ISME Journal - Table of Contents alert Volume 10 Issue 9

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Advertisement The Nature Microbiology Community provides a forum for the sharing and discussion of ideas and opinions about microbiology. Through posts, discussions, images and videos, it can be used by members to communicate with each other and with editors. Topics on the Community range from microbiology research, policy, society and day-to-day life.  join, post, share, discuss TABLE OF CONTENTS Volume 10, Issue 9 (September 2016) In this issue Perspective Mini Review Original Articles Short Communications Also new AOP Sign up for e-alerts Recommend to your library Web feed Subscribe Advertisement Visit us in Montreal at the 16th International Symposium on Microbial Ecology! Come and pick up free copies of The ISME Journal (ISMEJ), branded pens, post-it notes, stressballs, how to get published booklets and more at The ISME Society booth in Montreal, 21-26 August 2016. Click here to visit the ISMEJ homepage for more news and information Perspective Top Engineering microbial consortia for controllable outputs OPEN Stephen R Lindemann, Hans C Bernstein, Hyun-Seob Song, Jim K Fredrickson, Matthew W Fields, Wenying Shou, David R Johnson and Alexander S Beliaev ISME J 2016 10: 2077-2084; advance online publication, March 11, 2016; 10.1038/ismej.2016.26 Abstract | Full Text Mini Review Top Beyond the Black Queen Hypothesis Alix Mas, Shahrad Jamshidi, Yvan Lagadeuc, Damien Eveillard and Philippe Vandenkoornhuyse ISME J 2016 10: 2085-2091; advance online publication, March 8, 2016; 10.1038/ismej.2016.22 Abstract | Full Text Original Articles Top Evidence of horizontal gene transfer between obligate leaf nodule symbionts Marta Pinto-Carbó, Simon Sieber, Steven Dessein, Thomas Wicker, Brecht Verstraete, Karl Gademann, Leo Eberl and Aurelien Carlier ISME J 2016 10: 2092-2105; advance online publication, March 15, 2016; 10.1038/ismej.2016.27 Abstract | Full Text Metatranscriptomic evidence of pervasive and diverse chemolithoautotrophy relevant to C, S, N and Fe cycling in a shallow alluvial aquifer OPEN Talia N M Jewell, Ulas Karaoz, Eoin L Brodie, Kenneth H Williams and Harry R Beller ISME J 2016 10: 2106-2117; advance online publication, March 4, 2016; 10.1038/ismej.2016.25 Abstract | Full Text Multi-year assessment of coastal planktonic fungi reveals environmental drivers of diversity and abundance Joe D Taylor and Michael Cunliffe ISME J 2016 10: 2118-2128; advance online publication, March 4, 2016; 10.1038/ismej.2016.24 Abstract | Full Text Regulatory (pan-)genome of an obligate intracellular pathogen in the PVC superphylum OPEN Marie de Barsy, Antonio Frandi, Gaël Panis, Laurence Théraulaz, Trestan Pillonel, Gilbert Greub and Patrick H Viollier ISME J 2016 10: 2129-2144; advance online publication, March 8, 2016; 10.1038/ismej.2016.23 Abstract | Full Text Evolutionary tradeoffs in cellular composition across diverse bacteria OPEN Christopher P Kempes, Lawrence Wang, Jan P Amend, John Doyle and Tori Hoehler ISME J 2016 10: 2145-2157; advance online publication, April 5, 2016; 10.1038/ismej.2016.21 Abstract | Full Text Diverse, uncultivated bacteria and archaea underlying the cycling of dissolved protein in the ocean William D Orsi, Jason M Smith, Shuting Liu, Zhanfei Liu, Carole M Sakamoto, Susanne Wilken, Camille Poirier, Thomas A Richards, Patrick J Keeling, Alexandra Z Worden and Alyson E Santoro ISME J 2016 10: 2158-2173; advance online publication, March 8, 2016; 10.1038/ismej.2016.20 Abstract | Full Text Declines in both redundant and trace species characterize the latitudinal diversity gradient in tintinnid ciliates John R Dolan, Eun Jin Yang, Sung-Ho Kang and Tae Siek Rhee ISME J 2016 10: 2174-2183; advance online publication, March 18, 2016; 10.1038/ismej.2016.19 Abstract | Full Text Nitrification and its influence on biogeochemical cycles from the equatorial Pacific to the Arctic Ocean OPEN Takuhei Shiozaki, Minoru Ijichi, Kazuo Isobe, Fuminori Hashihama, Ken-ichi Nakamura, Makoto Ehama, Ken-ichi Hayashizaki, Kazutaka Takahashi, Koji Hamasaki and Ken Furuya ISME J 2016 10: 2184-2197; advance online publication, February 26, 2016; 10.1038/ismej.2016.18 Abstract | Full Text Seasonal variation in nifH abundance and expression of cyanobacterial communities associated with boreal feather mosses OPEN Denis Warshan, Guillaume Bay, Nurun Nahar, David A Wardle, Marie-Charlotte Nilsson and Ulla Rasmussen ISME J 2016 10: 2198-2208; advance online publication, February 26, 2016; 10.1038/ismej.2016.17 Abstract | Full Text Ecological patterns, diversity and core taxa of microbial communities in groundwater-fed rapid gravity filters OPEN Arda Gülay, Sanin Musovic, Hans-Jørgen Albrechtsen, Waleed Abu Al-Soud, Søren J Sørensen and Barth F Smets ISME J 2016 10: 2209-2222; advance online publication, March 8, 2016; 10.1038/ismej.2016.16 Abstract | Full Text Genomic and in situ investigations of the novel uncultured Chloroflexi associated with 0092 morphotype filamentous bulking in activated sludge Simon Jon McIlroy, Søren Michael Karst, Marta Nierychlo, Morten Simonsen Dueholm, Mads Albertsen, Rasmus Hansen Kirkegaard, Robert James Seviour and Per Halkjær Nielsen ISME J 2016 10: 2223-2234; advance online publication, February 23, 2016; 10.1038/ismej.2016.14 Abstract | Full Text Ecological robustness of the gut microbiota in response to ingestion of transient food-borne microbes OPEN Chenhong Zhang, Muriel Derrien, Florence Levenez, Rémi Brazeilles, Sonia A Ballal, Jason Kim, Marie-Christine Degivry, Gaëlle Quéré, Peggy Garault, Johan E T van Hylckama Vlieg, Wendy S Garrett, Joël Doré and Patrick Veiga ISME J 2016 10: 2235-2245; advance online publication, March 8, 2016; 10.1038/ismej.2016.13 Abstract | Full Text Ecological succession leads to chemosynthesis in mats colonizing wood in sea water Dimitri Kalenitchenko, Marlène Dupraz, Nadine Le Bris, Carole Petetin, Christophe Rose, Nyree J West and Pierre E Galand ISME J 2016 10: 2246-2258; advance online publication, February 23, 2016; 10.1038/ismej.2016.12 Abstract | Full Text Resource-dependent attenuation of species interactions during bacterial succession OPEN Damian W Rivett, Thomas Scheuerl, Christopher T Culbert, Shorok B Mombrikotb, Emma Johnstone, Timothy G Barraclough and Thomas Bell ISME J 2016 10: 2259-2268; advance online publication, February 19, 2016; 10.1038/ismej.2016.11 Abstract | Full Text Protistan community analysis: key findings of a large-scale molecular sampling OPEN Lars Grossmann, Manfred Jensen, Dominik Heider, Steffen Jost, Edvard Glücksman, Hanna Hartikainen, Shazia S Mahamdallie, Michelle Gardner, Daniel Hoffmann, David Bass and Jens Boenigk ISME J 2016 10: 2269-2279; advance online publication, February 9, 2016; 10.1038/ismej.2016.10 Abstract | Full Text The microbiome of coral surface mucus has a key role in mediating holobiont health and survival upon disturbance OPEN Bettina Glasl, Gerhard J Herndl and Pedro R Frade ISME J 2016 10: 2280-2292; advance online publication, March 8, 2016; 10.1038/ismej.2016.9 Abstract | Full Text A robust nitrifying community in a bioreactor at 50 °C opens up the path for thermophilic nitrogen removal Emilie NP Courtens, Eva Spieck, Ramiro Vilchez-Vargas, Samuel Bodé, Pascal Boeckx, Stefan Schouten, Ruy Jauregui, Dietmar H Pieper, Siegfried E Vlaeminck and Nico Boon ISME J 2016 10: 2293-2303; advance online publication, February 19, 2016; 10.1038/ismej.2016.8 Abstract | Full Text Evidence for quorum sensing and differential metabolite production by a marine bacterium in response to DMSP OPEN Winifred M Johnson, Melissa C Kido Soule and Elizabeth B Kujawinski ISME J 2016 10: 2304-2316; advance online publication, February 16, 2016; 10.1038/ismej.2016.6 Abstract | Full Text Ralstonia solanacearum lipopeptide induces chlamydospore development in fungi and facilitates bacterial entry into fungal tissues OPEN Joseph E Spraker, Laura M Sanchez, Tiffany M Lowe, Pieter C Dorrestein and Nancy P Keller ISME J 2016 10: 2317-2330; advance online publication, March 4, 2016; 10.1038/ismej.2016.32 Abstract | Full Text Short Communications Top Functional metagenomic screen reveals new and diverse microbial rhodopsins OPEN Alina Pushkarev and Oded Béjà ISME J 2016 10: 2331-2335; advance online publication, February 19, 2016; 10.1038/ismej.2016.7 Abstract | Full Text Phylogenetic organization of bacterial activity OPEN Ember M Morrissey, Rebecca L Mau, Egbert Schwartz, J Gregory Caporaso, Paul Dijkstra, Natasja van Gestel, Benjamin J Koch, Cindy M Liu, Michaela Hayer, Theresa A McHugh, Jane C Marks, Lance B Price and Bruce A Hungate ISME J 2016 10: 2336-2340; advance online publication, March 4, 2016; 10.1038/ismej.2016.28 Abstract | Full Text Advertisement Open for Submissions  A new open access, multi-and interdisciplinary journal dedicated to publishing the finest research on both microbial biofilms and microbiomes, the journal is now open for submissions. 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