Friday, February 5, 2016

Nature Biotechnology Contents: Volume 34 pp 115 - 212

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TABLE OF CONTENTS

February 2016 Volume 34, Issue 2

Editorial
News
Correction
Bioentrepreneur
Opinion and Comment
Features
News and Views
Computational Biology
Research
Careers and Recruitment

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Editorial

Top

Research not fit to print   p115
doi:10.1038/nbt.3488
Some biotech companies now eschew traditional publication in peer-reviewed journals. Does it matter?

News

Top

FDA approves 'farmaceutical' drug from transgenic chickens   pp117 - 119
Cormac Sheridan
doi:10.1038/nbt0216-117

Obama's cancer moonshot   p119
doi:10.1038/nbt0216-119

Biotechs target stagnant baldness market   pp120 - 121
Charles Schmidt
doi:10.1038/nbt0216-120

CRISPR patents to go on trial   p121
doi:10.1038/nbt0216-121a

Bayer joins CRISPR   p121
doi:10.1038/nbt0216-121b

Proteasome play C4 debuts   p122
doi:10.1038/nbt0216-122a

Direct Genomics revives Helicos sequencing system for China's hospitals   pp122 - 123
David Cyranoski
doi:10.1038/nbt0216-122b

New partner for Galapagos JAK drug   p123
doi:10.1038/nbt0216-123

Chimera research under the spotlight   pp124 - 125
Laura DeFrancesco
doi:10.1038/nbt0216-124

Correction

Top

Corrections   p125
doi:10.1038/nbt0216-125a

News

Top

Around the world in a month   p125
doi:10.1038/nbt0216-125b

FDA approves three different multiple myeloma drugs in one month   p126
Mark Ratner
doi:10.1038/nbt0216-126

Data Page

2015—another banner year for biotech   p127
Walter Yang
doi:10.1038/nbt.3480

Drug pipeline Q4 2015   p128
Laura DeFrancesco
doi:10.1038/nbt.3484

News Feature

Fresh from the biotech pipeline—2015   pp129 - 132
Chris Morrison
doi:10.1038/nbt.3472
Novel drug approvals in the United States surpassed even 2014's unprecedented totals. The broad trends are familiar but, as Chris Morrison reports, 2015 had its share of pioneering achievements.

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Bioentrepreneur

Top
Building a business

Preparing for crises   pp133 - 136
Mark Kessel and Robert Masella
doi:10.1038/nbt.3475

Opinion and Comment

Top
Correspondence

Cas9-triggered chain ablation of cas9 as a gene drive brake   pp137 - 138
Bing Wu, Liqun Luo and Xiaojing J Gao
doi:10.1038/nbt.3444

Precision and robustness of 2D-NMR for structure assessment of filgrastim biosimilars   pp139 - 141
Houman Ghasriani, Derek J Hodgson, Robert G Brinson, Ian McEwen, Lucinda F Buhse et al.
doi:10.1038/nbt.3474

Evolving Japanese regulations on companion diagnostics   pp141 - 144
Sumimasa Nagai, Masaaki Urata, Hiroyuki Sato, Motoki Mikami, Wataru Kuga et al.
doi:10.1038/nbt.3478

Features

Top
Patents

Persistent confusion and controversy surrounding gene patents   pp145 - 147
Christi J Guerrini, Mary A Majumder and Amy L McGuire
doi:10.1038/nbt.3470
The development of patent-specific educational resources and prompt resolution of patentability rules unsettled by recent US Supreme Court decisions are urgently needed in the genomics industry.

Recent patents in computational biology   p148
doi:10.1038/nbt.3487

News and Views

Top

Can CRISPR-Cas9 gene drives curb malaria?   pp149 - 150
Luke Alphey
doi:10.1038/nbt.3473
Gene drives in mosquitoes to reduce the spread of malaria move closer, though technical and regulatory hurdles remain.

Mapping regulatory elements   pp151 - 152
Yuexin Zhou and Wensheng Wei
doi:10.1038/nbt.3477
Regulatory genomic elements can now be studied in their native context using two CRISPR-based high-throughput approaches.

See also: Research by Rajagopal et al. | Research by Korkmaz et al.

Personalized nutrition through big data   pp152 - 154
Daniel McDonald, Gustavo Glusman and Nathan D Price
doi:10.1038/nbt.3476
A systems model of glycemic response identifies individually tailored diets that keep blood sugar in check.

Research Highlights   p154
doi:10.1038/nbt.3482

Biotechnology
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Computational Biology

Top
Analysis

Identifying recurrent mutations in cancer reveals widespread lineage diversity and mutational specificity   pp155 - 163
Matthew T Chang, Saurabh Asthana, Sizhi Paul Gao, Byron H Lee, Jocelyn S Chapman et al.
doi:10.1038/nbt.3391
Detection of recurrently mutated nucleotides identifies novel cancer hotspots in an analysis of >11,000 human tumor samples.

Research

Top
Brief Communications

Antisense oligonucleotide-directed inhibition of nonsense-mediated mRNA decay   pp164 - 166
Tomoki T Nomakuchi, Frank Rigo, Isabel Aznarez and Adrian R Krainer
doi:10.1038/nbt.3427
Antisense oligonucleotides target genetic disease via gene-specific inhibition of nonsense-mediated mRNA decay.

Articles

High-throughput mapping of regulatory DNA   pp167 - 174
Nisha Rajagopal, Sharanya Srinivasan, Kameron Kooshesh, Yuchun Guo, Matthew D Edwards et al.
doi:10.1038/nbt.3468
Cis-regulatory genomic regions necessary for gene expression are revealed by a high-throughput CRISPR-Cas9-based assay.

See also: News and Views by Zhou & Wei

Integration of electrophysiological recordings with single-cell RNA-seq data identifies neuronal subtypes   pp175 - 183
Janos Fuzik, Amit Zeisel, Zoltan Mate, Daniela Calvigioni, Yuchio Yanagawa et al.
doi:10.1038/nbt.3443
Patch-seq reveals new neuronal subtypes by combining electrophysiological and RNA-seq data on single neurons in situ.

Optimized sgRNA design to maximize activity and minimize off-target effects of CRISPR-Cas9   pp184 - 191
John G Doench, Nicolo Fusi, Meagan Sullender, Mudra Hegde, Emma W Vaimberg et al.
doi:10.1038/nbt.3437
Genome-wide sgRNA libraries based on rules for on-target activity improve results of Cas9-based screens and facilitate a further refinement of on- and off-target prediction algorithms.

Letters

Functional genetic screens for enhancer elements in the human genome using CRISPR-Cas9   pp192 - 198
Gozde Korkmaz, Rui Lopes, Alejandro P Ugalde, Ekaterina Nevedomskaya, Ruiqi Han et al.
doi:10.1038/nbt.3450
CRISPR-Cas9 is used for both enrichment and dropout screens of functional enhancers in human cells.

See also: News and Views by Zhou & Wei

Electrophysiological, transcriptomic and morphologic profiling of single neurons using Patch-seq   pp199 - 203
Cathryn R Cadwell, Athanasia Palasantza, Xiaolong Jiang, Philipp Berens, Qiaolin Deng et al.
doi:10.1038/nbt.3445
Patch-seq reveals new neuronal subtypes by combining electrophysiological and RNA-seq data on single neurons in situ.

Cre-dependent selection yields AAV variants for widespread gene transfer to the adult brain   pp204 - 209
Benjamin E Deverman, Piers L Pravdo, Bryan P Simpson, Sripriya Ravindra Kumar, Ken Y Chan et al.
doi:10.1038/nbt.3440
AAV vectors that efficiently transduce the mouse brain after intravenous injection are generated with a CRE-dependent selection system.

Errata

Erratum: Analysis of intronic and exonic reads in RNA-seq data characterizes transcriptional and post-transcriptional regulation   p210
Dimos Gaidatzis, Lukas Burger, Maria Florescu and Michael B Stadler
doi:10.1038/nbt0216-210a

Erratum: Share and share alike   p210
Samuel K Sia and Matthew P Owens
doi:10.1038/nbt0216-210b

Corrigendum

Corrigendum: Increasing the efficiency of precise genome editing with CRISPR-Cas9 by inhibition of nonhomologous end joining   p210
Takeshi Maruyama, Stephanie K Dougan, Matthias C Truttmann, Angelina M Bilate, Jessica R Ingram et al.
doi:10.1038/nbt0216-210c

Careers and Recruitment

Top

Fourth-quarter biotech job picture   p211
Michael Francisco
doi:10.1038/nbt.3479

People

People   p212
doi:10.1038/nbt.3486

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