Wednesday, January 20, 2016

Nature contents: 21 January 2016

If you are unable to see the message below, click here to view.

 
  journal cover  
Nature Volume 529 Issue 7586
 
This Week  
 
 
Editorials  
 
 
 
Harassment victims deserve better
Sexual harassment is rife in science. Universities must stop trying to save face: they must discipline perpetrators and support victims.
Blue future
Coastal wetlands can have a crucial role in the fight against climate change.
Repetitive flaws
Strict guidelines to improve the reproducibility of experiments are a welcome move.
 
Advertising.
World View  
 
 
 
Sexual harassment must not be kept under wraps
A female scientist who was harassed by a senior male colleague feels let down by the system that is supposed to protect her.
 
Seven Days  
 
 
 
The week in science: 15–21 January 2016
Ebola returns; a rocket falls; and a scientist is elected Taiwan’s vice-president.
Research Highlights  
 
 
 
Animal behaviour: Chimp friendships based on trust | Photonics: Practical source of single photons | Climate change: Oceans take a lot of heat | Immunology: Immune cell goes awry with age | Organic chemistry: Spring-loaded bond adds variety | Neuroscience: Chemical revives neuron function | Palaeontology: Extinct giraffe was a huge beast | Astronomy: Brightest-ever supernova | Conservation: Protected areas miss key corals
Social Selection
Insider’s view of faculty search kicks off discussion online
 
 

Infectious disease control and elimination

The Diagnostics Modelling Consortium was established in 2013 to facilitate the integration of diagnostic data into models of disease transmission dynamics. In this supplement, the Consortium and its partners report on the latest research outcomes across several major diseases.

Available free online.

Financial support for publication has been provided by the Bill & Melinda Gates Foundation 
 
 
News in Focus
 
Scientists in the dark after French clinical trial proves fatal
Knowledge about the drug's structure would help researchers understand what happened.
Declan Butler, Ewen Callaway
  Bitter fight over CRISPR patent heats up
Unusual battle among academic institutions holds key to gene-editing tool’s future use.
Heidi Ledford
Evidence grows for giant planet on fringes of Solar System
Gravitational signature hints at massive object that orbits the Sun every 20,000 years.
Alexandra Witze
  Monster El Niño probed by meteorologists
Unprecedented Pacific Ocean campaign aims to improve forecasts for strong storms.
Richard Monastersky
Italian papers on genetically modified crops under investigation
Work that describes harm from crops was cited in Italian Senate hearing.
Alison Abbott
 
Features  
 
 
 
When chickens go wild
The feral chickens of Kauai provide a unique opportunity to study what happens when domesticated animals escape and evolve.
Ewen Callaway
Ecology’s $434,000,000 test
The United States has invested in a grand ecological observatory, but the project has been dogged by budget overruns and delays.
Chris Cesare
Multimedia  
 
 
Nature: 21 January 2016
This week, a brain sensor that melts away after use, a 10,000 year old murder mystery, and what happens when chickens go wild.
 
 
Advertising.
 
 
Comment
 
Interdisciplinarity: Bring biologists into biomimetics
Engineers, chemists and others taking inspiration from biological systems for human applications must team up with biologists, writes Emilie Snell-Rood.
Emilie Snell-Rood
Books and Arts  
 
 
 
Genomics: DNA and diasporas
Fatimah L. C. Jackson weighs up a study on the cultural politics of genetic testing among African Americans.
Fatimah L. C. Jackson
Multidisciplinarity: Collaborative to the core
Rick Rylance applauds a study on the lean new model for research teamwork.
Rick Rylance
Books in brief
Barbara Kiser reviews five of the week's best science picks.
Barbara Kiser
Correspondence  
 
 
 
Whaling permits: Japan's whaling is unscientific
Andrew S. Brierley, Phillip J. Clapham
  No myth: benefits of breast screening
Jeremy M. Berg, Wendie A. Berg
No myth: population rise unsustainable
Richard E. White
  Spain: Language ruling stymies brain gain
Pau Carazo, Enrique Font
China: Water scheme acts as ecological buffer
Han Lin, Saixing Zeng, Hanyang Ma
 
Obituary  
 
 
 
Alfred Goodman Gilman (1941–2015)
Pharmacologist who won a Nobel prize for his discovery of G proteins.
Robert J. Lefkowitz
 
 
Specials
 
TECHNOLOGY FEATURE  
 
 
 
Finding function in mystery transcripts
Little is known about the function of most long non-coding RNAs. But a suite of new tools might change that.
Kelly Rae Chi
 
 
Research
 
NEW ONLINE  
 
 
 
Infection biology: Small RNA with a large impact
A simultaneous comparison of the RNA molecules expressed by Salmonella bacteria and human cells during infection reveals how a bacterial small RNA alters the transcript profiles of both the bacteria and the host cells.
Allowable CO2 emissions based on regional and impact-related climate targets
Targets for reducing atmospheric carbon dioxide are related to regional changes in climate extremes rather than to changes in global mean temperature, in order to convey their urgency better to individual countries.
Dual RNA-seq unveils noncoding RNA functions in host–pathogen interactions
Using dual RNA-seq technology to profile RNA expression simultaneously in the bacterial pathogen Salmonella and its host during infection reveals molecular phenotypes of small noncoding RNAs in the infection process.
Structure of the E6/E6AP/p53 complex required for HPV-mediated degradation of p53
Structural details of how oncogenic human papilloma viruses induce cancer by targeting the tumour suppressor p53 for ubiquitin-mediated degradation.
Structure of transcribing mammalian RNA polymerase II
The first high-resolution, cryo-electron microscopy structure of mammalian RNA polymerase II, in the form of a transcribing complex comprising DNA template and RNA transcript.
Graded Foxo1 activity in Treg cells differentiates tumour immunity from spontaneous autoimmunity
The transcription factor Foxo1 is shown to be involved in the determination of distinct subsets of regulatory T (Treg) cells, and the differentiation of activated phenotype Treg cells is associated with the repression of the Foxo1-dependent transcriptional program; constitutively active Foxo1 expression triggers depletion of activated Treg cells in peripheral tissues and leads to CD8 T-cell-mediated autoimmunity and anti-tumour immunity.
Bioresorbable silicon electronic sensors for the brain
Electronic implants are often used in diagnosing and treating human illness, but permanent implants come with problems; here, devices are described that can sense temperature, pressure, pH or thermal characteristics, and—crucially—are fully resorbable by the body.
Mitofusin 2 maintains haematopoietic stem cells with extensive lymphoid potential
The role of mitochondria in haematopoietic stem-cell maintenance has not been examined in detail; here mitofusin 2, which modulates mitochondrial fusion and tethering of endoplasmic reticulum to the mitochondria, is shown to be necessary for the maintenance of haematopoietic stem cells with extensive lymphoid potential.
Lithium-ion battery structure that self-heats at low temperatures
Here we report a lithium-ion all-climate battery that very efficiently heats itself up in extremely cold environments by diverting current through a strip of metal foil to generate heat of resistance and then reverts to normal high-power operation.
A mechanism of viral immune evasion revealed by cryo-EM analysis of the TAP transporter
The cryo-electron microscopy structure of human TAP transporter, a peptide transporter central to MHC class I antigen presentation and cellular immunity, in complex with the herpes simplex virus protein ICP47.
Structure of a HOIP/E2~ubiquitin complex reveals RBR E3 ligase mechanism and regulation
The first structure of fully active HOIP of the RBR family of RING-type E3 ligases in its transfer complex with an E2~ubiquitin conjugate provides insights into its mechanism of action, including the ideal alignment of the E2 and E3 catalytic centres for ubiquitin transfer and the allosteric regulation of the RBR family.
Non-classical correlations between single photons and phonons from a mechanical oscillator
Non-classically correlated pairs of single photons and phonons are generated and read out from a nanomechanical resonator, demonstrating that such resonators could be used for light–matter quantum interfaces.
Corrigendum: CMT2D neuropathy is linked to the neomorphic binding activity of glycyl-tRNA synthetase
Corrigendum: Dissecting a circuit for olfactory behaviour in Caenorhabditis elegans
Corrigendum: Discovery of Atg5/Atg7-independent alternative macroautophagy
Corrigendum: DDX5 and its associated lncRNA Rmrp modulate TH17 cell effector functions
Brief Communications Arising  
 
 
 
Control of proteasomal proteolysis by mTOR
Jinghui Zhao, Gonzalo A. Garcia, Alfred L. Goldberg
Zhang & Manning reply
Yinan Zhang, Brendan D. Manning
News and Views  
 
 
 
Evolution: A sisterly dispute
Maximilian J. Telford, Leonid L. Moroz, Kenneth M. Halanych
Earth science: Another energy source for the geodynamo
Bruce Buffett
Cancer: Bet on drug resistance
Jeff Settleman
 

The University of Central Florida's Faculty Cluster Initiative fosters the development of talented, interdisciplinary teams focused on solving today's toughest scientific and societal challenges through teaching and research. We're hiring new faculty members in the area of sustainable coastal systems to advance UCF's unique areas of excellence and global impact.
Epidemiology: A global picture of melioidosis
Bart J. Currie, Mirjam Kaestli
 
Cell biology: Lipid code for membrane recycling
Tamas Balla
50 & 100 Years Ago
 
Ecology: Biodiversity and productivity entwined
Kevin Gross
Exotic Atoms: Antimatter may matter
Thomas J. Phillips
 
Insight  
 
 
 
Frontiers in biology
Barbara Marte, Sadaf Shadan, Clare Thomas et al.
Metastatic colonization by circulating tumour cells
Joan Massagué, Anna C. Obenauf
Reparative inflammation takes charge of tissue regeneration
Michael Karin, Hans Clevers
Angiocrine functions of organ-specific endothelial cells
Shahin Rafii, Jason M. Butler, Bi-Sen Ding
Protein misfolding in the endoplasmic reticulum as a conduit to human disease
Miao Wang, Randal J. Kaufman
Antibacterial drug discovery in the resistance era
Eric D. Brown, Gerard D. Wright
Articles  
 
 
 
The functional diversity of retinal ganglion cells in the mouse
Two-photon calcium imaging reveals that the mouse retina contains more than 30 functionally distinct retinal ganglion cells, including some that have not been described before, exceeding current estimates and suggesting that the functional diversity of retinal ganglion cells may be much larger than previously thought.
Tom Baden, Philipp Berens, Katrin Franke et al.
Divergent clonal selection dominates medulloblastoma at recurrence
To address the question of whether a recurrent tumour is genetically similar to the tumour at diagnosis, the evolution of medulloblastoma has been studied in both an in vivo mouse model of clinical tumour therapy as well as in humans with recurrent disease; targeted tumour therapies are usually based on targets present in the tumour at diagnosis but the results from this study indicate that post-treatment recurring tumours (compared with the tumour at diagnosis) have undergone substantial clonal divergence of the initial dominant tumour clone.
A. Sorana Morrissy, Livia Garzia, David J. H. Shih et al.
Codon influence on protein expression in E. coli correlates with mRNA levels
In-depth analyses of protein expression studies are used to derive a new codon-influence metric that correlates with global protein levels, mRNA levels and mRNA lifetimes in vivo, indicating tight coupling between translation efficiency and mRNA stability; genes redesigned based on these analyses consistently yield high protein expression levels both in vivo and in vitro.
Grégory Boël, Reka Letso, Helen Neely et al.
Letters  
 
 
 
A prevalence of dynamo-generated magnetic fields in the cores of intermediate-mass stars
Suppression of dipolar oscillation modes by strong magnetic fields in the cores of intermediate-mass red giant stars reveals that powerful magnetic dynamos were very common in the previously convective cores of these stars.
Dennis Stello, Matteo Cantiello, Jim Fuller et al.
A phosphoinositide conversion mechanism for exit from endosomes
A mechanism for phosphoinositide conversion at endosomes to enable exit from the endosomal system, suggesting that defective phosphoinositide conversion at endosomes underlies X-linked centronuclear myopathy.
Katharina Ketel, Michael Krauss, Anne-Sophie Nicot et al.
Exposed water ice on the nucleus of comet 67P/Churyumov–Gerasimenko
Using infrared wavelengths, micrometre-sized water-ice grains have been identified on the nucleus (which is mostly coated in a dark material) of comet 67P/Churyumov–Gerasimenko.
G. Filacchione, M. C. De Sanctis, F. Capaccioni et al.
Integrative modelling reveals mechanisms linking productivity and plant species richness
Data from grasslands across five continents show clear signals of numerous underlying mechanisms linking ecosystem productivity and species richness.
James B. Grace, T. Michael Anderson, Eric W. Seabloom et al.
Inter-group violence among early Holocene hunter-gatherers of West Turkana, Kenya
A case of inter-group violence among hunter-gatherers on the shores of Lake Turkana in Kenya 10,000 years ago.
M. Mirazón Lahr, F. Rivera, R. K. Power et al.
NANOG alone induces germ cells in primed epiblast in vitro by activation of enhancers
In mouse embryonic stem cells converted to an epiblast fate in vitro—a state in which the cells can also gain germ cell fate if exposed to the signalling molecule BMP4—the sole expression of the transcription factor NANOG is shown to be sufficient to induce germ cell fate, in the absence of BMP4.
Kazuhiro Murakami, Ufuk Günesdogan, Jan J. Zylicz et al.
Future ocean hypercapnia driven by anthropogenic amplification of the natural CO2 cycle
Data-based projections suggest that the natural CO2 cycle could be amplified by up to ten times by 2100 in some oceanic regions if atmospheric CO2 concentrations continue to increase, which could detrimentally affect major fisheries.
Ben I. McNeil, Tristan P. Sasse
Super-resolution imaging reveals distinct chromatin folding for different epigenetic states
Using super-resolution imaging to directly observe the three-dimensional organization of Drosophila chromatin at a scale spanning sizes from individual genes to entire gene regulatory domains, the authors find that transcriptionally active, inactive and Polycomb-repressed chromatin states each have a distinct spatial organisation.
Alistair N. Boettiger, Bogdan Bintu, Jeffrey R. Moffitt et al.
Powering Earth’s dynamo with magnesium precipitation from the core
The thermal conductivity of iron is now known to be much larger than had been thought, implying that thermal convection and radiogenic heating would not have been enough to sustain the Earth’s geodynamo; here it is shown that the precipitation of magnesium-bearing minerals from the core could have served as the required power source.
Joseph G. O’Rourke, David J. Stevenson
Response and resistance to BET bromodomain inhibitors in triple-negative breast cancer
BET inhibitors that target bromodomain chromatin readers such as BRD4 are being explored as potential therapeutics in cancer; here triple-negative breast cancer cell lines are shown to respond to BET inhibitors and resistance seems to be associated with transcriptional changes rather than drug efflux and mutations, opening potential avenues to improve clinical responses to BET inhibitors.
Shaokun Shu, Charles Y. Lin, Housheng Hansen He et al.
A lithium–oxygen battery based on lithium superoxide
Lithium–oxygen batteries allow oxygen to be reduced at the battery’s cathode when a current is drawn; in present-day batteries, this results in formation of Li2O2, but it is now shown that another high energy density material, namely LiO2, with better electronic conduction can be used instead as the discharge product, if the electrode is decorated with iridium nanoparticles.
Jun Lu, Yun Jung Lee, Xiangyi Luo et al.
An improved limit on the charge of antihydrogen from stochastic acceleration
Stochastic acceleration applied to 1,000 trapped antihydrogen atoms yields a 20-fold reduction of the experimental upper bound on the magnitude of the charge of antihydrogen, which is expected to be charge neutral.
M. Ahmadi, M. Baquero-Ruiz, W. Bertsche et al.
Motor neurons control locomotor circuit function retrogradely via gap junctions
Motor neurons in zebrafish are shown to be more than simply output neurons, since they are able to influence, through gap junctions, the strength of the input they receive from V2a interneurons and, thereby, the frequency and duration of locomotor activity.
Jianren Song, Konstantinos Ampatzis, E. Rebecka Björnfors et al.
 
 
 
npj Vaccines is an online-only, open access, multidisciplinary journal dedicated to publishing cutting-edge research and development on human and veterinary vaccines. npj Vaccines is now open for submissions — explore the benefits of submitting your next manuscript to the journal.
 
 
Careers & Jobs
 
Column  
 
 
 
Paper craft
Dmitry Budker, Derek Jackson Kimball
Tracked changes
Eli Lazarus
Q&AS  
 
 
 
Trade talk: Science strategist
Monya Baker
Futures  
 
 
There is a beep
One-way traffic.
Filip Wiltgren
 
 
 
 
 

naturejobs.com

naturejobs.com Science jobs of the week

 
 
 

Senior Research Associate

 
 

University of East Anglia (UEA) 

 
 
 
 
 

Postdoctoral Fellow / Research Associate

 
 

Memorial Sloan Kettering Cancer Center (MSKCC)  

 
 
 
 
 

PostDoc (M / F) Biomarker Research

 
 

Boehringer Ingelheim 

 
 
 
 
 

Fellowships

 
 

Dana-Farber Cancer Institute (DFCI) 

 
 
 
 

No matter what your career stage, student, postdoc or senior scientist, you will find articles on naturejobs.com to help guide you in your science career. Keep up-to-date with the latest sector trends, vote in our reader poll and sign-up to receive the monthly Naturejobs newsletter.

 
 
 
 
 
 
 

natureevents.com - The premier science events website

natureevents directory featured events

 
 
 
 

AAI Advanced Course in Immunology

 
 

31.07.16 Boston, USA

 
 
 
 

Natureevents Directory is the premier resource for scientists looking for the latest scientific conferences, courses, meetings and symposia. Featured across Nature Publishing Group journals and centrally at natureevents.com it is an essential reference guide to scientific events worldwide.

 
 
 
 
 
Your email address is in the Nature mailing list.

You have been sent this Table of Contents Alert because you have opted in to receive it. You can change or discontinue your e-mail alerts at any time, by modifying your preferences on your nature.com account at: www.nature.com/nams/svc/myaccount (You will need to log in to be recognised as a nature.com registrant).
 
 
For further technical assistance, please contact our registration department at registration@nature.com

For print subscription enquiries, please contact our subscription department at subscriptions@nature.com

For other enquiries, please contact feedback@nature.com

Nature Publishing Group | 75 Varick Street, 9th Floor | New York | NY 10013-1917 | USA

Nature Publishing Group's offices:

Principal offices: London - New York - Tokyo

Worldwide offices: Basingstoke - Boston - Buenos Aires - Delhi - Hong Kong - Madrid - Melbourne - Munich - Paris - San Francisco - Seoul - Washington DC

Macmillan Publishers Limited is a company incorporated in England and Wales under company number 785998 and whose registered office is located at Brunel Road, Houndmills, Basingstoke, Hampshire RG21 6XS.

© 2016 Macmillan Publishers Limited. All Rights Reserved.
 

No comments: