Wednesday, November 18, 2015

Nature contents: 19 November 2015

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  journal cover  
Nature Volume 527 Issue 7578
 
This Week  
 
 
Editorials  
 
 
 
Research for all
Numbers on racial bias in research grants awarded by the US National Institutes of Health show that science has more to learn about inclusiveness.
Defensive drives
Researchers exploring ways to genetically alter wild populations are wise to air their plans.
Dope rules
Science is beside the point when an entrenched culture in a sport supports scoundrels.
 
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World View  
 
 
 
Time to cry out for academic freedom
Giving staff and students a say in how institutions are run would strengthen governance and clip the wings of administrators, argues Colin Macilwain.
 
Seven Days  
 
 
 
The week in science: 13–19 November 2015
Space junk splashdown; glyphosate risk assessed; US space miners get rights.
Research Highlights  
 
 
 
Conservation: How to save a species | Genetic engineering: Boosting 'gene drive' safety | Animal behaviour: Polarized light as a secret signal | Microbiology: Antibiotics make MRSA worse | Muscle biology: Dog saved from muscular disease | Biotechnology: Adult cells edited and reprogrammed | Natural history: Selenium linked to mass extinctions | Materials: Super-thin superconductor | Environmental science: Chemicals hinder oil-eating microbes
Social Selection
How to judge scientists’ strengths
 
 
News in Focus
 
Long-sought biological compass discovered
Protein complex offers explanation for how animals sense Earth's magnetic pull.
David Cyranoski
  Freefall space cubes are test for gravitational wave spotter
Europe’s long-awaited LISA Pathfinder spacecraft has two metal cubes at its heart, which it will attempt to isolate from every force except for gravity.
Elizabeth Gibney
Wayward satellites repurposed to test general relativity
Scientists will use wonky orbit to test Einstein—s theories.
Elizabeth Gibney
  Racial bias continues to haunt NIH grants
Minorities still less likely to win biomedical funding.
Erika Check Hayden
Equality: Racial bias haunts NIH grants
Minorities are still less likely to get biomedical funding.
Erika Check Hayden
  The exoplanet files
What we know about alien worlds — and what—s coming next.
Alexandra Witze
Features  
 
 
 
The quantum source of space-time
Many physicists believe that entanglement is the essence of quantum weirdness — and some now suspect that it may also be the essence of space-time geometry.
Ron Cowen
Multimedia  
 
 
Podcast: 19 November 2015
This week, a nursery for big baby planets, meddling with taste perception, China’s mega water transfer plan, and the 100th anniversary of general relativity.
Video: Three things Rosetta taught us about Comet 67P
Nature Video reveals three facts we now know about Comet 67P and three mysteries we have yet to solve…
Correction  
 
 
Clarification
 
 
Comment
 
Sustainability: Transfer project cannot meet China's water needs
Better local water management is the way to keep pace with escalating demands, not pumping water across the country, warn Jon Barnett and colleagues.
Jon Barnett, Sarah Rogers, Michael Webber et al.
History: Einstein was no lone genius
Lesser-known and junior colleagues helped the great physicist to piece together his general theory of relativity, explain Michel Janssen and Jürgen Renn
Michel Janssen, Jürgen Renn
Books and Arts  
 
 
 
Books in brief
Barbara Kiser reviews five of the week's best science picks.
Barbara Kiser
Mathematics: Logic and Lewis Carroll
As Alice's Adventures in Wonderland reaches 150, Francine Abeles surveys its creator's wide-ranging legacy.
Francine F. Abeles
Correspondence  
 
 
 
Peat fires: emissions likely to worsen
Susan G. Laurance, William F. Laurance
  Peat fires: consumers to help beat them out
Lahiru S. Wijedasa, Mary Rose C. Posa, Gopalasamy R. Clements
Energy: Time for Russia to tap renewables
Alexander Gorobets
  Cannabis: monitor policy changes
Lucas Wiessing
Cannabis: debated schizophrenia link
Matthew Large, Marta Di Forti, Robin Murray
 
Obituary  
 
 
 
Richard Heck (1931–2015)
Organic chemist who won a Nobel for palladium catalysis.
Victor Snieckus
 
 
Specials
 
Outlook: Breast Cancer  
 
 
 
Breast cancer
Chris Woolston
  A tumour through time
Will Tauxe
Perspective: The risks of overdiagnosis
Alexandra Barratt
  Immunology: Another shot at cancer
Charles Schmidt
Genetics: Big hopes for big data
Jill U. Adams
  Medicine: Eyes on the target
Michael Eisenstein
Molecular biology: Marked progress
Hannah Hoag
  Genetics: Relative risk
Moises Velasquez-Manoff
Screening: Don't look now
Emily Sohn
  Breast cancer: 4 big questions
Chris Woolston
Sponsor
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SUPPLEMENT: Brain disorders across the lifespan  
 
 
 
Brain disorders across the lifespan OPEN
Roger I. Glass
Brain and other nervous system disorders across the lifespan — global challenges and opportunities OPEN
Donald Silberberg, Nalini P. Anand, Kathleen Michels et al.
Reducing neurodevelopmental disorders and disability through research and interventions OPEN
Michael J. Boivin, Angelina M. Kakooza, Benjamin C. Warf et al.
A focus on adolescence to reduce neurological, mental health and substance-use disability OPEN
Leslie L. Davidson, Elena L. Grigorenko, Michael J. Boivin et al.
Nervous system disorders across the life course in resource-limited settings OPEN
Gretchen L. Birbeck, Ana-Claire Meyer, Adesola Ogunniyi
Global research challenges and opportunities for mental health and substance-use disorders OPEN
Florence Baingana, Mustafa al'Absi, Anne E. Becker et al.
Global research priorities for infections that affect the nervous system OPEN
Chandy C. John, Hélène Carabin, Silvia M. Montano et al.
A global perspective on the influence of environmental exposures on the nervous system OPEN
Desire Tshala-Katumbay, Jean-Claude Mwanza, Diane S. Rohlman et al.
Global neurotrauma research challenges and opportunities OPEN
Andrés M. Rubiano, Nancy Carney, Randall Chesnut et al.
Regional research priorities in brain and nervous system disorders OPEN
Vijayalakshmi Ravindranath, Hoang-Minh Dang, Rodolfo G. Goya et al.
Building global capacity for brain and nervous system disorders research OPEN
Linda B. Cottler, Joseph Zunt, Bahr Weiss et al.
Produced with financial support from:
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Research
 
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Metabolism: Inflammation keeps old mice healthy
Immune cells called regulatory T cells accumulate in fat during ageing. The anti-inflammatory activity of these cells worsens age-associated defects in metabolism, in contrast to its effect in obesity.
Genomics: Acorn worms in a nutshell
The genome sequences of two members of the hemichordate group of marine invertebrates bring the evolution of their relatives, including vertebrates, into sharper focus.
Circadian clocks: A receptor for subtle temperature changes
The protein IR25a is best known for its role as an odour receptor in flies, but an analysis reveals that it also acts to synchronize the circadian clock by sensing small temperature fluctuations.
A perisinusoidal niche for extramedullary haematopoiesis in the spleen
Haematopoietic stem cells normally reside in a bone marrow niche but they are recruited to the spleen after physiological stresses; here, endothelial cells and stromal cells around sinusoidal blood vessels of the spleen are shown to secrete key niche factors to support this process.
Hemichordate genomes and deuterostome origins OPEN
Sequencing the genomes of two enteropneusts reveals complex genomic organization and developmental innovation in the ancestor of deuterostomes, a group of animals including echinoderms (starfish and their relatives) and chordates (which includes humans).
The ontogeny of fairness in seven societies
An analysis of when children develop a sense of fairness (receiving less or more than a peer) is compared across seven different societies; aversion to receiving less emerges early in childhood in all societies, whereas aversion to receiving more emerges later in childhood and only in three of the seven societies studied.
Therapeutic antibodies reveal Notch control of transdifferentiation in the adult lung
Inhibitory antibodies to two specific human and mouse Notch ligands, Jagged1 and Jagged2, are generated and shown to have beneficial effects in a goblet cell metaplasia asthma model; systemic Jagged1 inhibition transdifferentiates secretory cells into ciliated cells in the mouse, demonstrating that Jagged1 from ciliated cells normally holds back secretory cells to adopt the ciliated fate.
Ubiquitous time variability of integrated stellar populations
The number of long-period variable stars in a stellar population is directly related to their lifetime, which is difficult to predict from first principles; here a time-dependent stellar population model is constructed that includes the effects of long-period variable stars, and is applied to the galaxy M87.
Sweet and bitter taste in the brain of awake behaving animals
Activation of the sweet and bitter cortical fields in awake mice evokes predetermined behavioural programs, independent of learning and experience, illustrating the hardwired and innate nature of the sense of taste.
Potential sea-level rise from Antarctic ice-sheet instability constrained by observations
Recent work has suggested that sections of the West Antarctic ice sheet are already rapidly retreating, raising concerns about increased sea-level rise; now, an ice-sheet model is used to simulate the mass loss from the entire Antarctic ice sheet to 2200, suggesting that it could contribute up to 30 cm of sea-level rise by 2100 and 72 cm by 2200, but is unlikely to contribute more.
Drosophila Ionotropic Receptor 25a mediates circadian clock resetting by temperature
A Drosophila chemosensory receptor, expressed in leg sensory neurons, is necessary for behavioural and molecular synchronization of the fly's circadian clock to low-amplitude temperature cycles; this temperature-sensing pathway functions independently from the known temperature sensors of the fly's antennae.
Depletion of fat-resident Treg cells prevents age-associated insulin resistance
Fat-resident regulatory T cells (fTreg cells) accumulate in adipose tissue of mice as a function of age, but not obesity; mice without fTreg cells are protected against age-associated insulin resistance, but remain susceptible to obesity-associated insulin resistance and metabolic disease, indicating different aetiologies of age-associated versus obesity-associated insulin resistance.
Neonicotinoid pesticide exposure impairs crop pollination services provided by bumblebees
Despite substantial evidence that neonicotinoid pesticides can have negative effects on bees, there have been no reports that this leads to problems with pollination; here bumblebee colonies exposed to a neonicotinoid are shown to provide reduced pollination services to apple trees, leading to a reduction in seed number.
Corrigendum: The ‘obligate diploid’ Candida albicans forms mating-competent haploids
Corrigendum: Mutant IDH inhibits HNF-4α to block hepatocyte differentiation and promote biliary cancer
Corrigendum: The formation and fate of internal waves in the South China Sea
Pharmacogenomic agreement between two cancer cell line data sets
In panels of cancer cell lines analysed for their response to drug libraries, some studies have proposed distinct pharmacological sensitivities for some cell lines while other studies have not seen the same trends; here the data in the Cancer Cell Line Encyclopedia and the Genomics of Drug Sensitivity in Cancer are reassessed, and the authors report a stronger degree of concordance between the two data sets than that in a previous study.
News and Views  
 
 
 
Imaging techniques: Extra dimension for bone analysis
Peter Fratzl
Antibiotics: Homed to the hideout
Wolf-Dietrich Hardt
Cancer: Organ-seeking vesicles
Janusz Rak
   
 
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Astrophysics: Growing planet brought to light
Zhaohuan Zhu
 
Evolution: On the crest of becoming vertebrate
Marianne E. Bronner
Rehabilitation: Boost for movement
Randolph J. Nudo
 
50 & 100 Years Ago
Ecology: Ecosystem responses to climate extremes
Anja Rammig, Miguel D. Mahecha
 
Articles  
 
 
 
Dpp spreading is required for medial but not for lateral wing disc growth
The morphogen Decapentaplegic (Dpp) has been implicated in both wing patterning and growth in fruitflies; here, a nanobody-based morphotrap approach has been developed that rules out a role for the Dpp gradient in regulating lateral wing growth.
Stefan Harmansa, Fisun Hamaratoglu, Markus Affolter et al.
Novel antibody–antibiotic conjugate eliminates intracellular S. aureus
Antibiotic-resistant strains of Staphylococcus aureus, such as MRSA, are proving increasingly difficult to treat; here, one reason for this is confirmed to be the fact that S. aureus bacteria can reside in intracellular reservoirs where they are protected from antibiotics, but a new strategy—based on an antibody–antibiotic conjugate—can specifically target these reservoirs.
Sophie M. Lehar, Thomas Pillow, Min Xu et al.
Tumour exosome integrins determine organotropic metastasis
Exosomes originating from lung-, liver- and brain-tropic tumour cells are preferentially incorporated by specific resident cells of the target organs, thus preparing the site for metastasis; the expression of distinct combinations of exosomal integrin proteins determines the exosomal targeting to each of the three organs, and blocking these integrins reduces organotropic exosome uptake by the target organs, thereby reducing the likelihood of organotropic metastasis.
Ayuko Hoshino, Bruno Costa-Silva, Tang-Long Shen et al.
Gating machinery of InsP3R channels revealed by electron cryomicroscopy
This study has determined the electron cryomicroscopy structure of the mammalian type 1 InsP3 receptor in a ligand-free state at 4.7 Å resolution; although the central Ca2+-conduction pathway is similar to other ion channels, the unique architecture of the C-terminal domains of the tetrameric channel suggests that a distinctive allosteric mechanism underlies the activation of InsP3 gating.
Guizhen Fan, Matthew L. Baker, Zhao Wang et al.
Letters  
 
 
 
Accreting protoplanets in the LkCa 15 transition disk
Transition disks are natural laboratories for the study of planet formation, with inner clearings explained by the influence of accreting planets, but attempts to observe directly accretion onto protoplanets have proven unsuccessful so far; here the authors detect infrared emission from multiple companions of the LkCa 15 system and Ha emission from the innermost (LkCa 15 b), showing hot (~10,000 K) gas falling deep into the potential well of an accreting protoplanet.
S. Sallum, K. B. Follette, J. A. Eisner et al.
Measurement of interaction between antiprotons
The interaction between antiprotons, produced by colliding high-energy gold ions, is shown to be attractive, and two important parameters of this interaction are measured, namely the scattering length and the effective range.
The STAR Collaboration, L. Adamczyk, J. K. Adkins et al.
Nanostructure surveys of macroscopic specimens by small-angle scattering tensor tomography
An imaging method that combines small-angle X-ray scattering with tensor tomography to probe nanoscale structures in macroscopic samples is introduced and demonstrated by measuring the main orientation and the degree of orientation of nanoscale mineralized collagen fibrils in a human trabecula bone sample.
Marianne Liebi, Marios Georgiadis, Andreas Menzel et al.
Six-dimensional real and reciprocal space small-angle X-ray scattering tomography
A small-angle X-ray scattering computed tomography method that reduces the amount of data that needs to be collected and analysed to reconstruct the three-dimensional scattering distribution in reciprocal space of a three-dimensional sample in real space is demonstrated by measuring the orientation of collagen fibres within a human tooth.
Florian Schaff, Martin Bech, Paul Zaslansky et al.
Methane storage in flexible metal–organic frameworks with intrinsic thermal management
Two flexible metal-organic frameworks are presented as solid adsorbents for methane that undergo reversible phase transitions at specific methane pressures, enabling greater storage capacities of usable methane than have been achieved previously, while also providing internal heat management of the system.
Jarad A. Mason, Julia Oktawiec, Mercedes K. Taylor et al.
North Pacific deglacial hypoxic events linked to abrupt ocean warming
The processes responsible for driving the expansion of the ocean's oxygen minimum zones remain uncertain; here sediment core data from the Gulf of Alaska suggest that reduced oxygen solubility was a result of ocean warming initiating the expansion of the North Pacific oxygen minimum zone, leading to increased marine productivity and carbon export and, in turn, further reductions in dissolved oxygen levels.
S. K. Praetorius, A. C. Mix, M. H. Walczak et al.
The effects of life history and sexual selection on male and female plumage colouration
By quantifying the colouration of all approximately 6,000 species of passerine birds, certain life-history traits such as large body size and tropical distribution are found to increase ornamentation in both male and female birds, whereas cooperative breeding increases it in females only, and sexual selection diminishes it in females more than it increases it in males.
James Dale, Cody J. Dey, Kaspar Delhey et al.
Migratory neuronal progenitors arise from the neural plate borders in tunicates
Neuronal precursor cells in the tunicate Ciona intestinalis are shown to delaminate and undergo directed cell migration along either side of the neural tube before differentiating into bipolar neurons, suggesting that vertebrate neural-crest-derived sensory neurons have much deeper evolutionary roots.
Alberto Stolfi, Kerrianne Ryan, Ian A. Meinertzhagen et al.
Decapentaplegic and growth control in the developing Drosophila wing
The morphogen Decapentaplegic (Dpp) has been implicated in both wing patterning and growth in fruitflies; here, a CRISPR–Cas9 approach is used to rule out the Dpp gradient driving wing growth.
Takuya Akiyama, Matthew C. Gibson
Diversion of aspartate in ASS1-deficient tumours fosters de novo pyrimidine synthesis
ASS1, a urea cycle enzyme, promotes cancer cell proliferation by facilitating pyrimidine synthesis via CAD (carbamoyl-phosphate synthase 2, aspartate transcarbamylase, and dihydroorotase complex) activation.
Shiran Rabinovich, Lital Adler, Keren Yizhak et al.
DNA-dependent formation of transcription factor pairs alters their binding specificity
A high-throughput analysis of DNA binding in over 9,000 interacting transcription factor pairs reveals that the interactions are often actively mediated by the DNA itself and the composite DNA sites recognized are different from the individual motifs of each transcription factor.
Arttu Jolma, Yimeng Yin, Kazuhiro R. Nitta et al.
Histone H1 couples initiation and amplification of ubiquitin signalling after DNA damage
At the initiation of DNA double-strand break repair, a number of ubiquitylation events occur; here, the RNF8 ubiquitin E3 ligase and the ubiquitin-conjugating E2 enzyme, UBC13, are shown to primarily modify H1-type linker histones, via a K63 linkage.
Tina Thorslund, Anita Ripplinger, Saskia Hoffmann et al.
The inner workings of the hydrazine synthase multiprotein complex
Hydrazine is an intermediate in the process of anaerobic ammonium oxidation which has a major role in the Earth’s nitrogen cycle; the crystal structure of a hydrazine synthase enzyme provides insights into the mechanism of hydrazine synthesis.
Andreas Dietl, Christina Ferousi, Wouter J. Maalcke et al.
Corrigenda  
 
 
 
Corrigendum: Whole-genome characterization of chemoresistant ovarian cancer
Ann-Marie Patch, Elizabeth L. Christie, Dariush Etemadmoghadam et al.
Corrigendum: Improving survival by exploiting tumour dependence on stabilized mutant p53 for treatment
E. M. Alexandrova, A. R. Yallowitz, D. Li et al.
Errata  
 
 
 
Erratum: Arithmetic and local circuitry underlying dopamine prediction errors
Neir Eshel, Michael Bukwich, Vinod Rao et al.
Erratum: A positional Toll receptor code directs convergent extension in Drosophila
Adam C. Paré, Athea Vichas, Christopher T. Fincher et al.
 
 
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Careers & Jobs
 
Feature  
 
 
 
Lab transitions: The bumpy road to relocation
Paul Smaglik
Q&AS  
 
 
 
Turning point: Daniel Carder
Virginia Gewin
Futures  
 
 
Age progression
Family connections.
Susana Martinez-Conde
 
 
 
 
 

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