Friday, November 27, 2015

Nature Cell Biology contents: December 2015 Volume 17 Number 12, pp 1513 - 1607

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TABLE OF CONTENTS

December 2015 Volume 17, Issue 12

Editorials
News and Views
Articles
Letter
Resource
Technical Reports
Addendum
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Editorials

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The long road to reproducibility   pp1513 - 1514
doi:10.1038/ncb3283
In the mission to reduce irreproducibility, true change can only come about if all stakeholders — researchers, institutions, funders and journals — join together with common purpose.

Farewell to our chief   p1514
doi:10.1038/ncb3283

News and Views

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Rethinking glutamine addiction   pp1515 - 1517
Abigail S. Krall and Heather R. Christofk
doi:10.1038/ncb3278
Tumours reprogram their metabolism to maximize macromolecule biosynthesis for growth. However, which of the common tumour-associated metabolic activities are critical for proliferation remains unclear. Glutamate-derived glutamine is now shown to satisfy the glutamine needs of glioblastoma, indicating that glutamine anaplerosis is dispensable for growth.

See also: Article by Tardito et al.

A motor relay on ciliary tracks   pp1517 - 1519
Robert O'Hagan and Maureen M. Barr
doi:10.1038/ncb3279
A powerful combination of two-colour imaging in vivo, Fourier-filtered kymography and simulations provides a high-resolution view of kinesin-2 transport dynamics in cilia. This study reveals heterotrimeric kinesin-II as an 'obstacle-course runner' and homodimeric OSM-3 (KIF17) as a 'long-distance runner', and elucidates the 'baton handoff' between these two kinesin-2 motors on the microtubule track.

See also: Article by Prevo et al.

Metabolic exit from naive pluripotency   pp1519 - 1521
Jun Wu and Juan Carlos Izpisua Belmonte
doi:10.1038/ncb3269
Spatiotemporally distinct pluripotent states captured in vitro provide an accessible way of modelling early human development. An intricate interplay between the metabolome and histone modifications is now shown to drive the metabolic switch from human naive to primed pluripotency, one of the earliest steps of embryogenesis.

See also: Article by Sperber et al.

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Articles

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The metabolome regulates the epigenetic landscape during naive-to-primed human embryonic stem cell transition   pp1523 - 1535
Henrik Sperber, Julie Mathieu, Yuliang Wang, Amy Ferreccio, Jennifer Hesson et al.
doi:10.1038/ncb3264
By comparing the metabolomes, transcriptomes and epigenomes of human pluripotent stem cell lines, Sperber et al. show that interplay between the metabolome and histone modifications drives the metabolic switch from naive to primed pluripotency.

See also: News and Views by Wu & Belmonte

Functional differentiation of cooperating kinesin-2 motors orchestrates cargo import and transport in C. elegans cilia   pp1536 - 1545
Bram Prevo, Pierre Mangeol, Felix Oswald, Jonathan M. Scholey and Erwin J. G. Peterman
doi:10.1038/ncb3263
Using in vivo quantitative single-molecule fluorescence microscopy of kinesin II and OSM-3 motor dynamics in C. elegans cilia, Peterman and colleagues show that kinesin II loads cargo at the base, whereas OSM-3 transports the cargo to the tip.

See also: News and Views by O'Hagan & Barr

IRE1α is an endogenous substrate of endoplasmic-reticulum-associated degradation   pp1546 - 1555
Shengyi Sun, Guojun Shi, Haibo Sha, Yewei Ji, Xuemei Han et al.
doi:10.1038/ncb3266
Through a proteomics approach, Qi and colleagues and Long and colleagues identify the sensor of the unfolded protein response IRE1α as an endogenous substrate of the E3 ubiquitin ligase involved in ER-associated degradation, Hrd1.

Glutamine synthetase activity fuels nucleotide biosynthesis and supports growth of glutamine-restricted glioblastoma   pp1556 - 1568
Saverio Tardito, Anaïs Oudin, Shafiq U. Ahmed, Fred Fack, Olivier Keunen et al.
doi:10.1038/ncb3272
Gottlieb and colleagues demonstrate that glioblastoma cell proliferation under glutamine starvation conditions depends on the glutamine-synthetase-dependent conversion of glutamate to glutamine to fuel purine biosynthesis and cell growth.

See also: News and Views by Krall & Christofk

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Letter

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Transient junction anisotropies orient annular cell polarization in the Drosophila airway tubes   pp1569 - 1576
Chie Hosono, Ryo Matsuda, Boris Adryan and Christos Samakovlis
doi:10.1038/ncb3267
Samakovlis and colleagues perform a genome-wide, tissue-specific RNAi screen in the Drosophila larval and adult airway systems and find that an initial transient anisotropic distribution of aPKC drives fibre orientation during tube formation.

Resource

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Definition of a consensus integrin adhesome and its dynamics during adhesion complex assembly and disassembly   pp1577 - 1587
Edward R. Horton, Adam Byron, Janet A. Askari, Daniel H. J. Ng, Angélique Millon-Frémillon et al.
doi:10.1038/ncb3257
Humphries and colleagues analyse proteomic data of integrin adhesion complexes to derive a consensus integrin adhesome and characterize the temporal dynamics of adhesome component recruitment during adhesion complex assembly and disassembly.

Technical Reports

Top

A high-throughput platform for real-time analysis of membrane fission reactions reveals dynamin function   pp1588 - 1596
Srishti Dar, Sukrut C. Kamerkar and Thomas J. Pucadyil
doi:10.1038/ncb3254
Pucadyil and colleagues develop an in vitro technique to analyse the conformational dynamics of dynamin during membrane fission events in a real-time, high-throughput manner, using fluorescence microscopy.

Extracellular rigidity sensing by talin isoform-specific mechanical linkages   pp1597 - 1606
Katharina Austen, Pia Ringer, Alexander Mehlich, Anna Chrostek-Grashoff, Carleen Kluger et al.
doi:10.1038/ncb3268
Austen et al. generated talin biosensors to study integrin-based force transduction. They report that extracellular rigidity sensing requires talin's mechanical engagement and find talin isoform-dependent effects in integrin-mediated mechanosensing.

Addendum

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Addendum: A breast cancer stem cell niche supported by juxtacrine signalling from monocytes and macrophages   p1607
Haihui Lu, Karl R. Clauser, Wai Leong Tam, Julia Frose, Xin Ye et al.
doi:10.1038/ncb3281

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