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| Widespread seasonal gene expression reveals annual differences in human immunity and physiology OPEN |  | | Xaquin Castro Dopico, Marina Evangelou, Ricardo C. Ferreira, Hui Guo, Marcin L. Pekalski, Deborah J. Smyth, Nicholas Cooper, Oliver S. Burren, Anthony J. Fulford, Branwen J. Hennig, Andrew M. Prentice, Anette-G. Ziegler, Ezio Bonifacio, Chris Wallace and John A. Todd |  | | Infectious and chronic diseases display seasonal patterns, yet seasonal changes in physiology are rarely thought to affect human health. Here the authors show seasonal variation in all major blood cells and in gene and protein expression in diverse tissues, suggesting a mechanism for seasonal disease proneness and physiology. |  | | 12 May 2015 | doi: 10.1038/ncomms8000 |  | | Biological Sciences Genetics Medical research | 


| Anammox Planctomycetes have a peptidoglycan cell wall OPEN |  | | Muriel C.F. van Teeseling, Rob J. Mesman, Erkin Kuru, Akbar Espaillat, Felipe Cava, Yves V. Brun, Michael S. VanNieuwenhze, Boran Kartal and Laura van Niftrik |  | | Planctomycetes are unusual bacteria with complex intracellular compartments and an apparent lack of peptidoglycan in their cell walls. Here, van Teeseling et al. show that the cell wall of an anammox planctomycete does contain peptidoglycan, and propose to redefine planctomycetes as Gram-negative bacteria. |  | | 12 May 2015 | doi: 10.1038/ncomms7878 |  | | Biological Sciences Cell biology Microbiology | 


| MiR-125a targets effector programs to stabilize Treg-mediated immune homeostasis |  | | Wen Pan, Shu Zhu, Dai Dai, Zheng Liu, Dan Li, Bin Li, Nicola Gagliani, Yunjiang Zheng, Yuanjia Tang, Matthew T. Weirauch, Xiaoting Chen, Wei Zhu, Yue Wang, Bo Chen, Youcun Qian, Yingxuan Chen, Jingyuan Fang, Ronald Herbst, Laura Richman, Bahija Jallal et al. |  | | Compromised function of regulatory T cells can lead to autoimmunity. Here the authors show that miR-125a stabilizes regulatory T-cell function and is downregulated in lupus and Crohn’s disease, as well as autoimmune mouse models, and that a chemical miR-125a analogue reverts established disease in a mouse model of multiple sclerosis. |  | | 12 May 2015 | doi: 10.1038/ncomms8096 |  | | Biological Sciences Immunology | 

| CD11c-mediated deletion of Flip promotes autoreactivity and inflammatory arthritis OPEN |  | | Qi-Quan Huang, Harris Perlman, Robert Birkett, Renee Doyle, Deyu Fang, G. Kenneth Haines, William Robinson, Syamal Datta, Zan Huang, Quan-Zhen Li, Hyewon Phee and Richard M. Pope |  | | Dendritic cells are critical for initiation of immune responses and for induction of tolerance. Here the authors show that deletion of survival factor c-flip in CD11c-expressing cells subset perturbs CD8a+ dendritic cell, NK and macrophage pools, and leads to development of autoimmune arthritis. |  | | 12 May 2015 | doi: 10.1038/ncomms8086 |  | | Biological Sciences Immunology | 
| FoxO1 integrates direct and indirect effects of insulin on hepatic glucose production and glucose utilization |  | | InSug O-Sullivan, Wenwei Zhang, David H. Wasserman, Chong Wee Liew, Jonathan Liu, Jihye Paik, Ronald A. DePinho, Donna Beer Stolz, C. Ronald Kahn, Michael W. Schwartz and Terry G. Unterman |  | | Insulin and the transcription factor FoxO1 are key regulators of glucose metabolism. Using mice that lack insulin receptor and FoxO1 in the liver, O-Sullivan et al. show that extrahepatic effects of insulin are sufficient to maintain glucose homeostasis when hepatic FoxO1 is disrupted. |  | | 12 May 2015 | doi: 10.1038/ncomms8079 |  | | Biological Sciences Medical research | 
| External stimulation-controllable heat-storage ceramics OPEN |  | | Hiroko Tokoro, Marie Yoshikiyo, Kenta Imoto, Asuka Namai, Tomomichi Nasu, Kosuke Nakagawa, Noriaki Ozaki, Fumiyoshi Hakoe, Kenji Tanaka, Kouji Chiba, Rie Makiura, Kosmas Prassides and Shin-ichi Ohkoshi |  | | Materials that can store and release heat on demand are of use for energy storage applications. Here, the authors discover a ceramic material that can reversibly store energy from heat, light or electricity and release this energy as heat through the application of pressure. |  | | 12 May 2015 | doi: 10.1038/ncomms8037 |  | | Physical Sciences Materials science Physical chemistry | 



| Single-molecule super-resolution imaging of chromosomes and in situ haplotype visualization using Oligopaint FISH probes OPEN |  | | Brian J. Beliveau, Alistair N. Boettiger, Maier S. Avendaño, Ralf Jungmann, Ruth B. McCole, Eric F. Joyce, Caroline Kim-Kiselak, Frédéric Bantignies, Chamith Y. Fonseka, Jelena Erceg, Mohammed A. Hannan, Hien G. Hoang, David Colognori, Jeannie T. Lee, William M. Shih, Peng Yin, Xiaowei Zhuang and Chao-ting Wu |  | | The spatial organization of the genome within the nucleus impacts many processes. Here the authors combine oligo-based DNA FISH with single-molecule super-resolution microscopy to image single-copy genomic regions and, taking advantage of SNPs, distinguish allelic regions of homologous chromosomes. |  | | 12 May 2015 | doi: 10.1038/ncomms8147 |  | | Biological Sciences Cell biology Genetics | 
| Planctomycetes do possess a peptidoglycan cell wall OPEN |  | | Olga Jeske, Margarete Schüler, Peter Schumann, Alexander Schneider, Christian Boedeker, Mareike Jogler, Daniel Bollschweiler, Manfred Rohde, Christoph Mayer, Harald Engelhardt, Stefan Spring and Christian Jogler |  | | Planctomycetes appear to differ from all other bacteria in their cellular organization and their apparent lack of a peptidoglycan (PG) cell wall. Here Jeske et al. show that Planctomycetes do possess a typical PG cell wall and that their cellular architecture resembles that of Gram-negative bacteria. |  | | 12 May 2015 | doi: 10.1038/ncomms8116 |  | | Biological Sciences Cell biology Microbiology | 






| Evidence for photochemical production of reactive oxygen species in desert soils |  | | Christos D. Georgiou, Henry J. Sun, Christopher P. McKay, Konstantinos Grintzalis, Ioannis Papapostolou, Dimitrios Zisimopoulos, Konstantinos Panagiotidis, Gaosen Zhang, Eleni Koutsopoulou, George E. Christidis and Irene Margiolaki |  | | Intense solar radiation on desiccated desert soils can cause a short circuit in biogeochemical cycles leading to the release of CO2 and nitrogen oxides. Here, the authors show that this can be linked to the production of soil superoxide radicals, which then produce peroxides and hydroxyl radicals. |  | | 11 May 2015 | doi: 10.1038/ncomms8100 |  | | Earth Sciences Biogeochemistry | 
| Structural basis for dynamic mechanism of nitrate/nitrite antiport by NarK OPEN |  | | Masahiro Fukuda, Hironori Takeda, Hideaki E. Kato, Shintaro Doki, Koichi Ito, Andrés D. Maturana, Ryuichiro Ishitani and Osamu Nureki |  | | Nitrate/nitrite porters (NNP) play a central role in nitrate uptake in archaea, bacteria, fungi and plants. Here, Fukuda et al. use a liposome-based transport assay, X-ray crystallography and molecular dynamics simulation to reveal the dynamic nitrate/nitrite antiport mechanism of a bacterial NNP, NarK. |  | | 11 May 2015 | doi: 10.1038/ncomms8097 |  | | Biological Sciences Biochemistry Biophysics | 
| Oncogenes create a unique landscape of fragile sites |  | | Karin Miron, Tamar Golan-Lev, Raz Dvir, Eyal Ben-David and Batsheva Kerem |  | | Aberrant oncogene expression can cause replication stress leading to chromosomal breaks. Here the authors map the chromosomal break loci induced by two different oncogenes and by a replication inhibitor, and show that each treatment induces a unique pattern of breaks in the same cell type. |  | | 11 May 2015 | doi: 10.1038/ncomms8094 |  | | Biological Sciences Cancer Genetics | 

| Active graphene–silicon hybrid diode for terahertz waves OPEN |  | | Quan Li, Zhen Tian, Xueqian Zhang, Ranjan Singh, Liangliang Du, Jianqiang Gu, Jiaguang Han and Weili Zhang |  | | Graphene has demonstrated the ability to modulate terahertz (THz) waves by optical or electrical excitation, but modulation depths have been low. Here, Li et al. demonstrate enhanced modulation and polarity-dependent THz attenuation using external voltage bias and photoexcitation on a graphene–silicon film. |  | | 11 May 2015 | doi: 10.1038/ncomms8082 |  | | Physical Sciences Optical physics | 
| Absence of surrogate light chain results in spontaneous autoreactive germinal centres expanding VH81X-expressing B cells |  | | Ola Grimsholm, Weicheng Ren, Angelina I. Bernardi, Haixia Chen, Giljun Park, Alessandro Camponeschi, Dongfeng Chen, Berglind Bergmann, Nina Höök, Sofia Andersson, Anneli Strömberg, Inger Gjertsson, Susanna Cardell, Ulf Yrlid, Alessandra De Riva and Inga-Lill Mårtensson |  | | Self-reactive B cells producing autoantibodies are associated with autoimmune conditions. Here, the authors show that in mice lacking the surrogate light chain, which normally assembles with antibody heavy chain to form a pre-B-cell receptor, the autoantibody-producing cells derive from germinal centres. |  | | 11 May 2015 | doi: 10.1038/ncomms8077 |  | | Biological Sciences Immunology | 


| IL-10-producing intestinal macrophages prevent excessive antibacterial innate immunity by limiting IL-23 synthesis |  | | Petra Krause, Venetia Morris, Jason A. Greenbaum, Yoon Park, Unni Bjoerheden, Zbigniew Mikulski, Tracy Muffley, Jr-Wen Shui, Gisen Kim, Hilde Cheroutre, Yun-Cai Liu, Bjoern Peters, Mitchell Kronenberg and Masako Murai |  | | Innate immune responses are regulated in the intestine to prevent excessive inflammation. Here the authors demonstrate a pivotal role for intestinal macrophages that constitutively produce IL-10 in controlling excessive innate immune activation and preventing tissue damage after an acute bacterial infection. |  | | 11 May 2015 | doi: 10.1038/ncomms8055 |  | | Biological Sciences Immunology | 




| High-density waveguide superlattices with low crosstalk |  | | Weiwei Song, Robert Gatdula, Siamak Abbaslou, Ming Lu, Aaron Stein, Warren Y-C Lai, J. Provine, R. Fabian W. Pease, Demetrios N. Christodoulides and Wei Jiang |  | | High-density integration will be vital for silicon photonics, but as we approach sub-wavelength distances between components, the crosstalk becomes intolerable. Here, Song et al. demonstrate waveguide integration at a half-wavelength pitch with low crosstalk using advanced superlattice design concepts. |  | | 11 May 2015 | doi: 10.1038/ncomms8027 |  | | Physical Sciences Applied physics Condensed matter Optical physics | 

| RNA structure determination by solid-state NMR spectroscopy OPEN |  | | Alexander Marchanka, Bernd Simon, Gerhard Althoff-Ospelt and Teresa Carlomagno |  | | The determination of RNA structures within high-molecular weight protein-RNA complexes in non-crystalline state is technically challenging. Here, the authors describe a solid-state NMR protocol for the determination of RNA structures at high resolution. |  | | 11 May 2015 | doi: 10.1038/ncomms8024 |  | | Biological Sciences Biophysics | 



| TCR ITAM multiplicity is required for the generation of follicular helper T-cells OPEN |  | | SuJin Hwang, Amy C. Palin, LiQi Li, Ki-Duk Song, Jan Lee, Jasmin Herz, Noah Tubo, Hamlet Chu, Marion Pepper, Renaud Lesourne, Ekaterina Zvezdova, Julia Pinkhasov, Marc K. Jenkins, Dorian McGavern and Paul E. Love |  | | The strength of TCR activation shapes T cell selection and differentiation. Here the authors show by modulating the number of activatory motifs in TCR complex that the strength of TCR signal is critical for the development of some T cell subsets but not for T cell effector functions or repertoire. |  | | 11 May 2015 | doi: 10.1038/ncomms7982 |  | | Biological Sciences Immunology | 






| Ventral hippocampal afferents to the nucleus accumbens regulate susceptibility to depression OPEN |  | | Rosemary C. Bagot, Eric M. Parise, Catherine J. Peña, Hong-Xing Zhang, Ian Maze, Dipesh Chaudhury, Brianna Persaud, Roger Cachope, Carlos A. Bolaños-Guzmán, Joseph Cheer, Karl Deisseroth, Ming-Hu Han and Eric J. Nestler |  | | Enhanced glutamatergic transmission in the nucleus accumbens (NAc) has been implicated in the pathophysiology of depression, yet the underlying source is not known. Here, the authors demonstrate a unique role for ventral hippocampal-NAc glutamatergic projections in regulating depression-like behaviour. |  | | 08 May 2015 | doi: 10.1038/ncomms8062 |  | | Biological Sciences Neuroscience | 
| Direct observation of finite size effects in chains of antiferromagnetically coupled spins OPEN |  | | T. Guidi, B. Gillon, S. A. Mason, E. Garlatti, S. Carretta, P. Santini, A. Stunault, R. Caciuffo, J. van Slageren, B. Klemke, A. Cousson, G. A. Timco and R. E. P. Winpenny |  | | Molecular magnets are among the smallest structures that may be exploited for quantum information processing. Here, Guidi et al. use polarized neutron scattering to observe finite size effects and a noncollinear spin arrangement in a Cr8Cd ring molecule, an even-numbered open antiferromagnetic spin-3/2 chain. |  | | 08 May 2015 | doi: 10.1038/ncomms8061 |  | | Physical Sciences Applied physics Condensed matter | 
| Perovskite–fullerene hybrid materials suppress hysteresis in planar diodes OPEN |  | | Jixian Xu, Andrei Buin, Alexander H. Ip, Wei Li, Oleksandr Voznyy, Riccardo Comin, Mingjian Yuan, Seokmin Jeon, Zhijun Ning, Jeffrey J. McDowell, Pongsakorn Kanjanaboos, Jon-Paul Sun, Xinzheng Lan, Li Na Quan, Dong Ha Kim, Ian G. Hill, Peter Maksymovych and Edward H. Sargent |  | | Metal halide perovskites are promising for solar energy harvesting, but currently prone to a large hysteresis and current instability. Here, Xu et al. show improvements in a hybrid material in which the fullerene is distributed at perovskite grain boundaries and thus passivates defects effectively. |  | | 08 May 2015 | doi: 10.1038/ncomms8081 |  | | Physical Sciences Condensed matter Materials science Nanotechnology | 
| Clk post-transcriptional control denoises circadian transcription both temporally and spatially |  | | Immanuel Lerner, Osnat Bartok, Victoria Wolfson, Jerome S. Menet, Uri Weissbein, Shaked Afik, Daniel Haimovich, Chen Gafni, Nir Friedman, Michael Rosbash and Sebastian Kadener |  | | CLOCK (CLK) is essential for the development and maintenance of circadian rhythms in Drosophila. Here, the authors show that Clk mRNA is regulated by miRNA bantam, and deletion of bantam binding site leads to stochastic CLK-driven transcription and development of the circadian neurons. |  | | 08 May 2015 | doi: 10.1038/ncomms8056 |  | | Biological Sciences Cell biology Molecular biology | 
| eQTL mapping identifies insertion- and deletion-specific eQTLs in multiple tissues |  | | Jinyan Huang, Jun Chen, Jorge Esparza, Jun Ding, James T. Elder, Goncalo R. Abecasis, Young-Ae Lee, G. Mark Lathrop, Miriam F. Moffatt, William O. C. Cookson and Liming Liang |  | | Expression quantitative trait loci (eQTLs) may provide insight into the functional mechanisms underlying disease risk variants. Here the authors characterize INDEL-specific eQTLs in several tissues and show that these can have both tissue-specific and tissue-consistent effects. |  | | 08 May 2015 | doi: 10.1038/ncomms7821 |  | | Biological Sciences Genetics | 
| IM30 triggers membrane fusion in cyanobacteria and chloroplasts |  | | Raoul Hennig, Jennifer Heidrich, Michael Saur, Lars Schmüser, Steven J. Roeters, Nadja Hellmann, Sander Woutersen, Mischa Bonn, Tobias Weidner, Jürgen Markl and Dirk Schneider |  | | Thylakoid membranes are critical components of chloroplasts and cyanobacteria. Here, Hennig et al. demonstrate that IM30, a conserved chloroplast and cyanobacterial protein, binds to thylakoid membranes and can trigger membrane destabilization and fusion in a Mg2+ dependent manner. |  | | 08 May 2015 | doi: 10.1038/ncomms8018 |  | | Biological Sciences Cell biology Plant sciences | 


| Expression of the vault RNA protects cells from undergoing apoptosis OPEN |  | | Melanie Amort, Birgit Nachbauer, Selma Tuzlak, Arnd Kieser, Aloys Schepers, Andreas Villunger and Norbert Polacek |  | | Cellular functions of the vault complex, a large ribonucleoprotein assembly remain elusive. Here, the authors show that Epstein–Barr virus infection enhances the expression of the vault complex-associated RNAs, which leads to improved survival of infected cells due to the inhibition of cell apoptosis. |  | | 08 May 2015 | doi: 10.1038/ncomms8030 |  | | Biological Sciences Cell biology Virology | 
| JMJD1A is a signal-sensing scaffold that regulates acute chromatin dynamics via SWI/SNF association for thermogenesis OPEN |  | | Yohei Abe, Royhan Rozqie, Yoshihiro Matsumura, Takeshi Kawamura, Ryo Nakaki, Yuya Tsurutani, Kyoko Tanimura-Inagaki, Akira Shiono, Kenta Magoori, Kanako Nakamura, Shotaro Ogi, Shingo Kajimura, Hiroshi Kimura, Toshiya Tanaka, Kiyoko Fukami, Timothy F. Osborne, Tatsuhiko Kodama, Hiroyuki Aburatani, Takeshi Inagaki and Juro Sakai et al. |  | | Demethylase JMJD1A activates thermogenesis-related target genes in response to β-adrenergic hormones. Here, the authors show that phosphorylation of JMJD1A at S265 increases its interaction with the SWI/SNF chromatin remodeler, leading to long-range chromatin interactions and target gene activation. |  | | 07 May 2015 | doi: 10.1038/ncomms8052 |  | | Biological Sciences Cell biology Molecular biology | 


| IκBβ enhances the generation of the low-affinity NFκB/RelA homodimer |  | | Rachel Tsui, Jeffrey D. Kearns, Candace Lynch, Don Vu, Kim A. Ngo, Soumen Basak, Gourisankar Ghosh and Alexander Hoffmann |  | | The NFκB signalling pathway is regulated through the formation of transcription factor dimers but mechanisms controlling their formation are poorly understood. Here, Tsui et al. report that IκBb is a positive regulator of Rel-NFκB dimer formation, using in vitro and in vivo experiments and mathematical modelling. |  | | 07 May 2015 | doi: 10.1038/ncomms8068 |  | | Biological Sciences Cell biology | 





| Integrated digital inverters based on two-dimensional anisotropic ReS2 field-effect transistors OPEN |  | | Erfu Liu, Yajun Fu, Yaojia Wang, Yanqing Feng, Huimei Liu, Xiangang Wan, Wei Zhou, Baigeng Wang, Lubin Shao, Ching-Hwa Ho, Ying-Sheng Huang, Zhengyi Cao, Laiguo Wang, Aidong Li, Junwen Zeng, Fengqi Song, Xinran Wang, Yi Shi, Hongtao Yuan, Harold Y. Hwang et al. |  | | Many two-dimensional materials exhibit isotropic properties, but anisotropy can extend the functionality of future devices. Here, the authors fabricate field-effect transistors from single and few-layer rhenium disulfide and observe an anisotropic ratio of three to one along the two principle axes |  | | 07 May 2015 | doi: 10.1038/ncomms7991 |  | | Physical Sciences Applied physics Materials science | 





| The low-affinity complex of cytochrome c and its peroxidase OPEN |  | | Karen Van de Water, Yann G. J. Sterckx and Alexander N. Volkov |  | | The redox activity of cytochrome c in complex with its peroxidase has been rationalized by two possible models; a readily observable high-affinity complex and a more elusive but potentially more active low-affinity complex. Here, the authors provide an NMR-based structural mapping of this low-affinity complex. |  | | 06 May 2015 | doi: 10.1038/ncomms8073 |  | | Biological Sciences Biochemistry | 
| | | | |  | | | | | Latest Corrigendum | | | | | | Corrigendum: Adiponectin receptor 1 conserves docosahexaenoic acid and promotes photoreceptor cell survival |  | | Dennis S. Rice, Jorgelina M. Calandria, William C. Gordon, Bokkyoo Jun, Yongdong Zhou, Claire M. Gelfman, Songhua Li, Minghao Jin, Eric J. Knott, Bo Chang, Alex Abuin, Tawfik Issa, David Potter, Kenneth A. Platt and Nicolas G. Bazan |  | | 12 May 2015 | doi: 10.1038/ncomms8225 |  | | Biological Sciences Medical research Neuroscience | | |  | | | | | Latest Errata | | | | | | Erratum: Genomic signatures of human and animal disease in the zoonotic pathogen Streptococcus suis |  | | Lucy A. Weinert, Roy R. Chaudhuri, Jinhong Wang, Sarah E. Peters, Jukka Corander, Thibaut Jombart, Abiyad Baig, Kate J. Howell, Minna Vehkala, Niko Välimäki, David Harris, Tran Thi Bich Chieu, Nguyen Van Vinh Chau, James Campbell, Constance Schultsz, Julian Parkhill, Stephen D. Bentley, Paul R. Langford, Andrew N. Rycroft, Brendan W. Wren et al. |  | | 12 May 2015 | doi: 10.1038/ncomms8272 |  | | Biological Sciences Evolution Genetics Microbiology | 
 | | | | 
 | | | | | Erratum: A rare variant in APOC3 is associated with plasma triglyceride and VLDL levels in Europeans |  | | Nicholas J. Timpson, Klaudia Walter, Josine L. Min, Ioanna Tachmazidou, Giovanni Malerba, So-Youn Shin, Lu Chen, Marta Futema, Lorraine Southam, Valentina Iotchkova, Massimiliano Cocca, Jie Huang, Yasin Memari, Shane McCarthy, Petr Danecek, Dawn Muddyman, Massimo Mangino, Cristina Menni, John R. B. Perry, Susan M. Ring et al. |  | | 12 May 2015 | doi: 10.1038/ncomms8171 |  | | Biological Sciences Genetics Medical research | | |  | | | Advertisement |  | 1st Nature Immunology - Cellular & Molecular Immunology Joint Conference: Inflammation, Stress and Immune Homeostasis June 17-19, 2015 | The Swan Lake Hotel, Hefei, China
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