Wednesday, November 19, 2014

The ISME Journal - Table of Contents alert Volume 8 Issue 12

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The ISME Journal

TABLE OF CONTENTS

Volume 8, Issue 12 (December 2014)

In this issue
Commentary
Perspective
Original Articles
Short Communication
Corrigenda

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Commentary

Top

Re-analysis of omics data indicates Smithella may degrade alkanes by addition to fumarate under methanogenic conditions

Boonfei Tan, Camilla Nesbø and Julia Foght

ISME J 2014 8: 2353-2356; advance online publication, May 27, 2014; 10.1038/ismej.2014.87

Full Text

Which is more important for classifying microbial communities: who’s there or what they can do? OPEN

Zhenjiang Xu, Daniel Malmer, Morgan G I Langille, Samuel F Way and Rob Knight

ISME J 2014 8: 2357-2359; advance online publication, August 29, 2014; 10.1038/ismej.2014.157

Full Text

Perspective

Top

Ecological theory as a foundation to control pathogenic invasion in aquaculture OPEN

Peter De Schryver and Olav Vadstein

ISME J 2014 8: 2360-2368; advance online publication, June 3, 2014; 10.1038/ismej.2014.84

Abstract | Full Text

Original Articles

Top

Variation in gut microbial communities and its association with pathogen infection in wild bumble bees (Bombus)

Daniel P Cariveau, J Elijah Powell, Hauke Koch, Rachael Winfree and Nancy A Moran

ISME J 2014 8: 2369-2379; advance online publication, April 24, 2014; 10.1038/ismej.2014.68

Abstract | Full Text

Distinct signatures of host–microbial meta-metabolome and gut microbiome in two C57BL/6 strains under high-fat diet

Alesia Walker, Barbara Pfitzner, Susanne Neschen, Melanie Kahle, Mourad Harir, Marianna Lucio, Franco Moritz, Dimitrios Tziotis, Michael Witting, Michael Rothballer, Marion Engel, Michael Schmid, David Endesfelder, Martin Klingenspor, Thomas Rattei, Wolfgang zu Castell, Martin Hrabé de Angelis, Anton Hartmann and Philippe Schmitt-Kopplin

ISME J 2014 8: 2380-2396; advance online publication, June 6, 2014; 10.1038/ismej.2014.79

Abstract | Full Text

Interactions between Thaumarchaea, Nitrospira and methanotrophs modulate autotrophic nitrification in volcanic grassland soil

Anne Daebeler, Paul LE Bodelier, Zheng Yan, Mariet M Hefting, Zhongjun Jia and Hendrikus J Laanbroek

ISME J 2014 8: 2397-2410; advance online publication, May 23, 2014; 10.1038/ismej.2014.81

Abstract | Full Text

Coral transcriptome and bacterial community profiles reveal distinct Yellow Band Disease states in Orbicella faveolata

Collin J Closek, Shinichi Sunagawa, Michael K DeSalvo, Yvette M Piceno, Todd Z DeSantis, Eoin L Brodie, Michele X Weber, Christian R Voolstra, Gary L Andersen and Mónica Medina

ISME J 2014 8: 2411-2422; advance online publication, June 20, 2014; 10.1038/ismej.2014.85

Abstract | Full Text

Can marine bacteria be recruited from freshwater sources and the air?

Jérôme Comte, Eva S Lindström, Alexander Eiler and Silke Langenheder

ISME J 2014 8: 2423-2430; advance online publication, June 6, 2014; 10.1038/ismej.2014.89

Abstract | Full Text

Primate vaginal microbiomes exhibit species specificity without universal Lactobacillus dominance

Suleyman Yildirim, Carl J Yeoman, Sarath Chandra Janga, Susan M Thomas, Mengfei Ho, Steven R Leigh, Primate Microbiome Consortium, Bryan A White, Brenda A Wilson and Rebecca M Stumpf

ISME J 2014 8: 2431-2444; advance online publication, July 18, 2014; 10.1038/ismej.2014.90

Abstract | Full Text

Biodiversity acts as insurance of productivity of bacterial communities under abiotic perturbations

Ashutosh Awasthi, Mangal Singh, Sumit K Soni, Rakshapal Singh and Alok Kalra

ISME J 2014 8: 2445-2452; advance online publication, June 13, 2014; 10.1038/ismej.2014.91

Abstract | Full Text

Magnetosome-containing bacteria living as symbionts of bivalves

Suzanne C Dufour, Jason R Laurich, Rebecca T Batstone, Bonita McCuaig, Alexander Elliott and Kristin M Poduska

ISME J 2014 8: 2453-2462; advance online publication, June 10, 2014; 10.1038/ismej.2014.93

Abstract | Full Text

Genomic insights into the uncultured genus ‘Candidatus Magnetobacterium’ in the phylum Nitrospirae

Wei Lin, Aihua Deng, Zhang Wang, Ying Li, Tingyi Wen, Long-Fei Wu, Martin Wu and Yongxin Pan

ISME J 2014 8: 2463-2477; advance online publication, June 10, 2014; 10.1038/ismej.2014.94

Abstract | Full Text

Unveiling microbial activities along the halocline of Thetis, a deep-sea hypersaline anoxic basin

Maria G Pachiadaki, Michail M Yakimov, Violetta LaCono, Edward Leadbetter and Virginia Edgcomb

ISME J 2014 8: 2478-2489; advance online publication, June 20, 2014; 10.1038/ismej.2014.100

Abstract | Full Text

Widespread expression of conserved small RNAs in small symbiont genomes

Allison K Hansen and Patrick H Degnan

ISME J 2014 8: 2490-2502; advance online publication, July 11, 2014; 10.1038/ismej.2014.121

Abstract | Full Text

Comparative single-cell genomics reveals potential ecological niches for the freshwater acI Actinobacteria lineage

Trevor W Ghylin, Sarahi L Garcia, Francisco Moya, Ben O Oyserman, Patrick Schwientek, Katrina T Forest, James Mutschler, Jeffrey Dwulit-Smith, Leong-Keat Chan, Manuel Martinez-Garcia, Alexander Sczyrba, Ramunas Stepanauskas, Hans-Peter Grossart, Tanja Woyke, Falk Warnecke, Rex Malmstrom, Stefan Bertilsson and Katherine D McMahon

ISME J 2014 8: 2503-2516; advance online publication, August 5, 2014; 10.1038/ismej.2014.135

Abstract | Full Text

Alternatives to vitamin B1 uptake revealed with discovery of riboswitches in multiple marine eukaryotic lineages OPEN

Darcy McRose, Jian Guo, Adam Monier, Sebastian Sudek, Susanne Wilken, Shuangchun Yan, Thomas Mock, John M Archibald, Tadhg P Begley, Adrian Reyes-Prieto and Alexandra Z Worden

ISME J 2014 8: 2517-2529; advance online publication, August 29, 2014; 10.1038/ismej.2014.146

Abstract | Full Text

Comparative genomics reveals surprising divergence of two closely related strains of uncultivated UCYN-A cyanobacteria

Deniz Bombar, Philip Heller, Patricia Sanchez-Baracaldo, Brandon J Carter and Jonathan P Zehr

ISME J 2014 8: 2530-2542; advance online publication, September 16, 2014; 10.1038/ismej.2014.167

Abstract | Full Text

Short Communication

Top

Role of methylotrophs in the degradation of hydrocarbons during the Deepwater Horizon oil spill

Tony Gutierrez and Michael D Aitken

ISME J 2014 8: 2543-2545; advance online publication, May 27, 2014; 10.1038/ismej.2014.88

Abstract | Full Text

Effects of sample treatments on genome recovery via single-cell genomics

Scott Clingenpeel, Patrick Schwientek, Philip Hugenholtz and Tanja Woyke

ISME J 2014 8: 2546-2549; advance online publication, June 13, 2014; 10.1038/ismej.2014.92

Abstract | Full Text

Corrigenda

Top

Variation in gut microbial communities and its association with pathogen infection in wild bumble bees (Bombus)

Daniel P Cariveau, J Elijah Powell, Hauke Koch, Rachael Winfree and Nancy A Moran

ISME J 2014 8: 2550-2551; 10.1038/ismej.2014.180

Full Text

Natural occurrence of microbial sulphur oxidation by long-range electron transport in the seafloor

Sairah Y Malkin, Alexandra MF Rao, Dorina Seitaj, Diana Vasquez-Cardenas, Eva-Maria Zetsche, Silvia Hidalgo-Martinez, Henricus TS Boschker and Filip JR Meysman

ISME J 2014 8: 2551-2552; 10.1038/ismej.2014.170

Full Text

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