Wednesday, June 6, 2012

Nature Communications - 6 June 2012

 
Nature Communications
 
 
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06 June 2012
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Shen et al. show that the joint-nesting species of Taiwan yuhinas, where group members are unrelated, is more cooperative under unfavourable environmental conditions.
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 Latest ArticlesView all Articles 
 
A polychromatic approach to far-field superlensing at visible wavelengths OPEN
Fabrice Lemoult, Mathias Fink and Geoffroy Lerosey
Metamaterial lenses enable super-resolution imaging of structures, beating the diffraction limit. Lemoult et al. propose a resonant metalens based on plasmonic nanorods that uses polychromatic light to achieve sub-diffraction limit focusing and imaging in the visible spectral region.
06 Jun | Nat Commun 3:889 doi:10.1038/ncomms1885 (2012)
Physical sciences Optical physics
Abstract | Full Text | PDF (1,772 kB) |
Supplementary Information

Electric-field control of magnetic domain-wall velocity in ultrathin cobalt with perpendicular magnetization
D. Chiba, M. Kawaguchi, S. Fukami, N. Ishiwata, K. Shimamura, K. Kobayashi and T. Ono
The manipulation of domain walls in magnetic materials is attracting interest because of its potential use in memory devices. Chiba et al. demonstrate that the velocity of domain walls in perpendicularly magnetized films can be changed by more than an order of magnitude by applying an electric field.
06 Jun | Nat Commun 3:888 doi:10.1038/ncomms1888 (2012)
Physical sciences Applied physics 
Materials science 
Nanotechnology
Abstract | Full Text | PDF (803 kB) |
Supplementary Information

Valley-selective circular dichroism of monolayer molybdenum disulphide  OPEN
Ting Cao, Gang Wang, Wenpeng Han, Huiqi Ye, Chuanrui Zhu, Junren Shi, Qian Niu, Pingheng Tan, Enge Wang, Baoli Liu and Ji Feng
The monolayer transition-metal dichalcogenide molybdenum disulphide has recently attracted attention owing to its distinctive electronic properties. Cao and co-workers present numerical evidence suggesting that circularly polarized light can preferentially excite a single valley in the band structure of this system.
06 Jun | Nat Commun 3:887 doi:10.1038/ncomms1882 (2012)
Physical sciences Condensed matter 
Materials science Theoretical physics
Abstract | Full Text | PDF (574 kB)

Genomics of DNA cytosine methylation in Escherichia coli reveals its role in stationary phase transcription
Christina Kahramanoglou, Ana I. Prieto, Supriya Khedkar, Bettina Haase, Ankur Gupta, Vladimir Benes, Gillian M. Fraser, Nicholas M. Luscombe and Aswin S.N. Seshasayee
How DNA cytosine methylation affects gene expression in Escherichia coli is poorly understood. Here, the first genome-wide study of cytosine methylation in E. coli at single-base resolution reveals that cytosine methylation controls the expression of genes during the stationary growth phase.
06 Jun | Nat Commun 3:886 doi:10.1038/ncomms1878 (2012)
Biological sciences Bioinformatics 
Microbiology
Abstract | Full Text | PDF (728 kB) |
Supplementary Information

Unfavourable environment limits social conflict in Yuhina brunneiceps
Sheng-Feng Shen, Sandra L. Vehrencamp, Rufus A. Johnstone, Hsiang-Ching Chen, Shih-Fan Chan, Wen-Yi Liao, Kai-Yin Lin and Hsiao-Wei Yuan
Ecological factors impact cooperative and competitive behaviour, creating social conflict. Here, predictions from a game-theory model together with observations of Taiwan yuhinas—a joint-nesting species where group members are unrelated—show that these birds are more cooperative in unfavourable environmental conditions.
06 Jun | Nat Commun 3:885 doi:10.1038/ncomms1894 (2012)
Biological sciences Ecology Evolution 
Zoology
Abstract | Full Text | PDF (434 kB) |
Supplementary Information

Melanoma induction by ultraviolet A but not ultraviolet B radiation requires melanin pigment OPEN
Frances P. Noonan, M. Raza Zaidi, Agnieszka Wolnicka-Glubisz, Miriam R. Anver, Jesse Bahn, Albert Wielgus, Jean Cadet, Thierry Douki, Stephane Mouret, Margaret A. Tucker, Anastas Popratiloff, Glenn Merlino and Edward C. De Fabo
Exposure to ultraviolet light is responsible for a large proportion of melanomas but the molecular mechanisms are unknown. In this study, melanoma is found to be induced in mice by UVA and UVB light in a pigment-dependent and -independent manner, respectively, resulting in different types of DNA damage.
06 Jun | Nat Commun 3:884 doi:10.1038/ncomms1893 (2012)
Biological sciences Cancer 
Medical research
Abstract | Full Text | PDF (837 kB)

Alternative splicing of CD44 mRNA by ESRP1 enhances lung colonization of metastatic cancer cell
Toshifumi Yae, Kenji Tsuchihashi, Takatsugu Ishimoto, Takeshi Motohara, Momoko Yoshikawa, Go J. Yoshida, Takeyuki Wada, Takashi Masuko, Kaoru Mogushi, Hiroshi Tanaka, Tsuyoshi Osawa, Yasuharu Kanki, Takashi Minami, Hiroyuki Aburatani, Mitsuyo Ohmura, Akiko Kubo, Makoto Suematsu, Kazuhisa Takahashi, Hideyuki Saya and Osamu Nagano
CD44 is a cell surface protein that is a marker for stem cell-like cancer cells and has a role in invasion and metastasis. Here, epithelial splicing regulatory protein 1 is shown to generate a CD44 variant protein that enhances metastasis in a mouse model and protects cells from oxidative stress.
06 Jun | Nat Commun 3:883 doi:10.1038/ncomms1892 (2012)
Biological sciences Cancer 
Cell biology 
Abstract | Full Text | PDF (1,345 kB) |
Supplementary Information

Observation of topologically protected bound states in photonic quantum walks
Takuya Kitagawa, Matthew A. Broome, Alessandro Fedrizzi, Mark S. Rudner, Erez Berg, Ivan Kassal, Alán Aspuru-Guzik, Eugene Demler and Andrew G. White
Topological phases are unusual states of matter whose properties are robust against small perturbations. Using a photonic quantum walk system, Kitagawa et al. simulate one-dimensional topological phases and reveal novel topological phenomena far from the static or adiabatic regimes.
06 Jun | Nat Commun 3:882 doi:10.1038/ncomms1872 (2012)
Physical sciences Optical physics 
Theoretical physics
Abstract | Full Text | PDF (584 kB)

Estimating the potential public health impact of seasonal malaria chemoprevention in African children OPEN
Matthew Cairns, Arantxa Roca-Feltrer, Tini Garske, Anne L. Wilson, Diadier Diallo, Paul J. Milligan, Azra C Ghani and Brian M. Greenwood
Seasonal malaria chemoprevention can lower the incidence of malaria in areas where transmission is highly periodical. Combining data on rainfall, population and malaria endemicity, Cairns et al. identify geographical areas in sub-Saharan Africa where this intervention is likely to be effective and cost-effective.
06 Jun | Nat Commun 3:881 doi:10.1038/ncomms1879 (2012)
Biological sciences Medical research 
Abstract | Full Text | PDF (698 kB) |
Supplementary Information

Digital quantum simulation of the statistical mechanics of a frustrated magnet
Jingfu Zhang, Man-Hong Yung, Raymond Laflamme, Alán Aspuru-Guzik and Jonathan Baugh
Geometrically frustrated spin systems are a class of statistical mechanical models that have received widespread attention, especially in condensed matter physics. This study experimentally demonstrates a quantum information processor that can simulate the behaviour of such frustrated spin system.
06 Jun | Nat Commun 3:880 doi:10.1038/ncomms1860 (2012)
Physical sciences Applied physics 
Condensed matter Physical chemistry 
Abstract | Full Text | PDF (1,116 kB) |
Supplementary Information

Anomalous high capacitance in a coaxial single nanowire capacitor
Zheng Liu, Yongjie Zhan, Gang Shi, Simona Moldovan, Mohamed Gharbi, Li Song, Lulu Ma, Wei Gao, Jiaqi Huang, Robert Vajtai, Florian Banhart, Pradeep Sharma, Jun Lou and Pulickel M. Ajayan
Devices made up of nanowires offer promise for a range of electronic, photonic and energy applications. Liu et al. fabricate a miniature capacitor by employing a thin layer of Cu2O as a separator between layers of carbon and copper.
06 Jun | Nat Commun 3:879 doi:10.1038/ncomms1833 (2012)
Physical sciences Applied physics 
Materials science Nanotechnology
Abstract | Full Text | PDF (1,268 kB) |
Supplementary Information

Structure and mechanism of a canonical poly(ADP-ribose) glycohydrolase
Mark S. Dunstan, Eva Barkauskaite, Pierre Lafite, Claire E. Knezevic, Amy Brassington, Marijan Ahel, Paul J. Hergenrother, David Leys and Ivan Ahel
Poly(ADP-ribose) glycohydrolase catabolises poly(ADP-ribose), which is covalently attached to proteins following post-translational modification. In this study, the structure of poly(ADP-ribose) glycohydrolase from Tetrahymena thermophila is reported in complex with the small molecule inhibitor RBPI-3.
06 Jun | Nat Commun 3:878 doi:10.1038/ncomms1889 (2012)
Biological sciences Biochemistry 
Molecular biology 
Abstract | Full Text | PDF (720 kB) |
Supplementary Information

Loss-of-function of inositol polyphosphate-4-phosphatase reversibly increases the severity of allergic airway inflammation
Jyotirmoi Aich, Ulaganathan Mabalirajan, Tanveer Ahmad, Anurag Agrawal and Balaram Ghosh
Inositol polyphosphate 4 phosphatase regulates phosphoinositide signalling and is associated with an increased risk of asthma. Aich et al. show that, in a mouse model of airway inflammation, calpains degrade inositol polyphosphate 4 phosphatase resulting in exacerbated phosphoinositide 3-kinase signalling.
06 Jun | Nat Commun 3:877 doi:10.1038/ncomms1880 (2012)
Biological sciences Immunology 
Medical research
Abstract | Full Text | PDF (1,734 kB) |
Supplementary Information

Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues OPEN
Alicia Lundby, Anna Secher, Kasper Lage, Nikolai B. Nordsborg, Anatoliy Dmytriyev, Carsten Lundby and Jesper V. Olsen
The function of proteins is often regulated by their phosphorylation at specific amino-acid residues. The authors of this article have catalogued phosphoproteins and their phosphorylation sites in 14 rat organs and tissues, and provide these data as a resource for researchers.
06 Jun | Nat Commun 3:876 doi:10.1038/ncomms1871 (2012)
Biological sciences Cell biology 
Systems biology
Abstract | Full Text | PDF (1,796 kB) |
Supplementary Information

Differentiation of multipotent vascular stem cells contributes to vascular diseases
Zhenyu Tang, Aijun Wang, Falei Yuan, Zhiqiang Yan, Bo Liu, Julia S. Chu, Jill A. Helms and Song Li
De-differentiation and proliferation of vascular smooth muscle cells is thought to have a dominant role in vascular remodelling. Here, Tang et al. identify a new type of multipotent vascular stem cell in the blood vessel wall that contributes to this process, thereby challenging the established hypothesis.
06 Jun | Nat Commun 3:875 doi:10.1038/ncomms1867 (2012)
Biological sciences Cell biology 
Medical research 
Abstract | Full Text | PDF (3,183 kB) |
Supplementary Information

Direct observation of prompt pre-thermal laser ion sheath acceleration OPEN
K. Zeil, J. Metzkes, T. Kluge, M. Bussmann, T.E. Cowan, S.D. Kraft, R. Sauerbrey and U. Schramm
High-intensity laser-plasma ion generation is promising as a compact proton source for applications like ion beam therapy. Using a femtosecond table-top laser system, Zeil et al. show that protons efficiently gain energy in the pre-thermal intra-pulse phase of the generation process.
06 Jun | Nat Commun 3:874 doi:10.1038/ncomms1883 (2012)
Physical sciences Fluids and plasma physics 
Optical physics
Abstract | Full Text | PDF (634 kB) |
Supplementary Information
 
Nature Communications
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